View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0940_high_9 (Length: 477)
Name: NF0940_high_9
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 24 - 470
Target Start/End: Complemental strand, 50970849 - 50970403
Alignment:
| Q |
24 |
tcatcatgattttctcatgacagatattcaatctgctattatccctccatcacaggacactgtttttgttctgttaaattgctctatagattctcctgtt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50970849 |
tcatcatgattttctcatgacagatattcaatctgctattatccctccatcacaggacactgtttttgttctgttaaattgctctatagattctcctgtt |
50970750 |
T |
|
| Q |
124 |
cttaaccattacaaatacctttgcttcaactttgaaggacacacttgtgatgaactttatggtggttgcaatgcttttagggtatttcatttgatgacaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
50970749 |
cttaaccattacaaatacctttgcttcaactttgaaggacacacttgtgatgaactttatggtggctgcaatgcttttagggtatttcatttgatgacaa |
50970650 |
T |
|
| Q |
224 |
atagctcaccaccctgttgtttcacaagttataatactatgaagtttatgagtatgaacattttggattgtacacattatactagtgtgtttaatagtga |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50970649 |
atagctcaccaccctgttgtttcacaagttataatactatgaagtttatgagtatgaacattttggattgtacacattatactagtgtgtttaatagtga |
50970550 |
T |
|
| Q |
324 |
taaattgagaggtgttggtcctttggattgggtttatgggattaaactttcttttagtgtgcctgatactggatgtgaaagttgtggacaatctggtggg |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50970549 |
taaattgagaggtgttggtcctttggattgggtttatgggattaaactttcttttagtgtgcctgatactggatgtgaaagttgtggacaatctggtggg |
50970450 |
T |
|
| Q |
424 |
atttgtgggtttgatactgaaactgaagctcttctttgtctgtgctc |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
50970449 |
atttgtgggtttgatactgaaactgaagctcttctttgtctctgctc |
50970403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 40856268 - 40856319
Alignment:
| Q |
239 |
gttgtttcacaagtt---ataatactatgaagtttatgagtatgaacatttt |
287 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||| ||||| |
|
|
| T |
40856268 |
gttgtttcacaagttgttataatactgtgaagtttatgagtatgaatatttt |
40856319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 25382815 - 25382751
Alignment:
| Q |
306 |
tagtgtgtttaatagtgataaattgagaggtgttggtcctttggattgggtttatgggattaaac |
370 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||||| ||| |||||||| |||||||| |
|
|
| T |
25382815 |
tagtgtgattaatagtgataaattggaaggtgttagtccttctaatttggtttatgagattaaac |
25382751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University