View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0940_low_11 (Length: 432)
Name: NF0940_low_11
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 204 - 428
Target Start/End: Complemental strand, 34354198 - 34353974
Alignment:
| Q |
204 |
gctttagcctttcttaaaatgaaccaaaaacactgattttatcttttgcttccacctcttgataatccaccacttaccccttaagaatcgttctatatcc |
303 |
Q |
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| T |
34354198 |
gctttagcctttcttaaaatgaaccaaaaacactgattttatcttttgcttccacgtcttgataatccaccacataccccttaagaatcgttctatatcc |
34354099 |
T |
|
| Q |
304 |
aagatcacaatggccaaatgaaaaatctaactcttatgtatctttcaccactaatttcatacccaaattgtagaaaatgagaagctccattatcgtgaca |
403 |
Q |
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| T |
34354098 |
aagatcacaatggccaaatgaaaaatctaactcttgtgtatctttcaccactaatttcatacccaaattgtagaaaatgagaagctccattatcgtgaca |
34353999 |
T |
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| Q |
404 |
aactccaatcacgtaaacactttgt |
428 |
Q |
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| T |
34353998 |
aactccaatcacgtaaacactttgt |
34353974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 25471590 - 25471481
Alignment:
| Q |
1 |
gagacaatttctgatagttgtttaatttgctattactattaacaaaaggtaaagactatagttaacgagttttggcatatatttgccaaatgttatgttt |
100 |
Q |
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||||||||||||||||||||||| |||||| || |||||||||||||| |||||| ||||||||||| | ||||||||||||||||||||||| ||||| |
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| T |
25471590 |
gagacaatttctgatagttgtttcatttgcaatgactattaacaaaagccaaagacaatagttaacgaatgttggcatatatttgccaaatgttgtgttt |
25471491 |
T |
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| Q |
101 |
gcacatggtc |
110 |
Q |
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| T |
25471490 |
tcacatggtc |
25471481 |
T |
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