View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0940_low_15 (Length: 386)
Name: NF0940_low_15
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 268 - 357
Target Start/End: Complemental strand, 32722738 - 32722649
Alignment:
| Q |
268 |
gttgctattcaacgaaaagacgttgtgatcaaacatcaaataagagtaagtgaatgatgaatctatcatgtgttagaggacgttcacaac |
357 |
Q |
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| T |
32722738 |
gttgctattcaacgaaaagaggttgtgatcaaacatcaaataagagtaagtgaatgatgaatctatcatgtgttagaggacgttcacaac |
32722649 |
T |
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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 15719477 - 15719390
Alignment:
| Q |
268 |
gttgctattcaacgaaaagacgttgtgatcaaacatcaaataagagtaagtgaatgatgaatctatcatgtgttagaggacgttcaca |
355 |
Q |
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| T |
15719477 |
gttgctcttcaacgaaaagacgtggtgatcaaacatcaaataagagtgagtgaatgatgaatctatcatgtgtaagaggacgttcaca |
15719390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 15745025 - 15745070
Alignment:
| Q |
296 |
tcaaacatcaaataagagtaagtgaatgatgaatctatcatgtgtt |
341 |
Q |
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| T |
15745025 |
tcaaacatcaaataagagtaagcgaaagataaatctatcatgtgtt |
15745070 |
T |
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