View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0940_low_16 (Length: 375)
Name: NF0940_low_16
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_low_16 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 9e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 140 - 375
Target Start/End: Original strand, 29462487 - 29462718
Alignment:
| Q |
140 |
ctcagagccagaatagaatattgaagatgaagaaaaaagaaattgaagatcggataccagatgtacgtgtcttcttttcttcccttttatttggtgtatc |
239 |
Q |
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| T |
29462487 |
ctcagagccagaatagaatattgaagatgaagaaaaaagaaattgaagatcggataccaga----cgtgtcttcttttctttccttttatttggtgtatc |
29462582 |
T |
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| Q |
240 |
acttgctctataattgcgaggatcctgcgacacttgttatacgcaat-tnnnnnnnggcatgtttgtcgttttgaggtaacaaagtgttgaaaaatggcc |
338 |
Q |
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| T |
29462583 |
acttgctctataattgcgaggatcctgcaacacttgttatacgcaataaaaaaaaaggcatgtttgtcgttttgaggtaacaaagtgttg-aaaatggcc |
29462681 |
T |
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| Q |
339 |
tatatgttgttaaggtgtaaaaaatgttgaaaaaatt |
375 |
Q |
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| T |
29462682 |
tatatgttgttaaggtgtaaaaaatgttgaaaaaatt |
29462718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 29461872 - 29461987
Alignment:
| Q |
28 |
cagattattattgataaatgtgtgctgtgtgtcagtttaagagttgacctgtgactagctaaagaaagaatcttggtatgaattgttttgtttccattca |
127 |
Q |
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| T |
29461872 |
cagattattattgataaatgtgtgctgtgtgtcagtttaagagttgacctgtgactagctaaagaaagaatcttggtatgaattgttttgtttccattca |
29461971 |
T |
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| Q |
128 |
ttgtttgagatcctca |
143 |
Q |
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| T |
29461972 |
ttgtttgagatcctca |
29461987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 29454488 - 29454546
Alignment:
| Q |
228 |
atttggtgtatcacttgctctataattgcgaggatcctgcgacacttgttatacgcaat |
286 |
Q |
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| T |
29454488 |
atttggtgtatcacttggtctgtaattgctaggatcctgcggcacctgctataagcaat |
29454546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 234
Target Start/End: Complemental strand, 9363454 - 9363367
Alignment:
| Q |
140 |
ctcagagccagaatagaatattgaagatgaagaaaaaagaaattgaagatcggataccagatgtacgtgtcttcttttcttcccttttatttggt |
234 |
Q |
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| T |
9363454 |
ctcaaagccagaatagaatatggtagatgaagaaaaaggaaattgaag-------accagatgtacatgtcttcttttctttccttttatttggt |
9363367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 9363293 - 9363234
Alignment:
| Q |
316 |
taacaaagtgttgaaaaatggcctatatgttgttaaggtgtaaaaaatgttgaaaaaatt |
375 |
Q |
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| T |
9363293 |
taacaaagtgttgagaaatggcttatatgtcgttaagttgtaaaaagtgttgaaacaatt |
9363234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 9295291 - 9295337
Alignment:
| Q |
87 |
taaagaaagaatcttggtatgaattgttttgtttccattcattgttt |
133 |
Q |
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| T |
9295291 |
taaagaaagaattttggtatgaattgctttttttccattcattgttt |
9295337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 9061803 - 9061854
Alignment:
| Q |
87 |
taaagaaagaatcttggtatgaattg-ttttgtttccattcattgtttgagat |
138 |
Q |
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| T |
9061803 |
taaagaacgaattttggtatgaattgcttttgttt-cattcattgtttgagat |
9061854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 9068672 - 9068723
Alignment:
| Q |
87 |
taaagaaagaatcttggtatgaattgttttgtttccattcattgtttgagatc |
139 |
Q |
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| T |
9068672 |
taaagaaagaattttggtatgaattgcttt-ttttcattcattctttgagatc |
9068723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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