View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0940_low_18 (Length: 362)

Name: NF0940_low_18
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0940_low_18
NF0940_low_18
[»] chr1 (8 HSPs)
chr1 (30-228)||(32047050-32047248)
chr1 (224-322)||(32047271-32047373)
chr1 (246-320)||(31492928-31493002)
chr1 (246-321)||(48872201-48872276)
chr1 (272-310)||(10895364-10895402)
chr1 (273-318)||(34046401-34046446)
chr1 (243-303)||(11867812-11867872)
chr1 (263-315)||(14758604-14758656)
[»] chr3 (5 HSPs)
chr3 (273-320)||(25299056-25299103)
chr3 (246-313)||(53766685-53766752)
chr3 (262-320)||(22288482-22288540)
chr3 (274-321)||(42676704-42676751)
chr3 (268-313)||(50941726-50941771)
[»] chr8 (4 HSPs)
chr8 (262-320)||(41207764-41207822)
chr8 (273-320)||(35139042-35139089)
chr8 (247-321)||(28459985-28460059)
chr8 (273-313)||(36782782-36782822)
[»] chr4 (4 HSPs)
chr4 (249-321)||(949875-949947)
chr4 (262-321)||(51291125-51291184)
chr4 (273-321)||(14964368-14964416)
chr4 (273-320)||(20784972-20785019)
[»] chr5 (1 HSPs)
chr5 (274-321)||(8143704-8143751)
[»] chr6 (2 HSPs)
chr6 (247-321)||(5924768-5924842)
chr6 (268-321)||(34185040-34185093)
[»] chr7 (3 HSPs)
chr7 (269-320)||(34534801-34534852)
chr7 (254-320)||(32724474-32724540)
chr7 (273-313)||(17003437-17003477)
[»] scaffold0262 (1 HSPs)
scaffold0262 (244-310)||(17590-17656)
[»] chr2 (2 HSPs)
chr2 (254-320)||(3723401-3723467)
chr2 (263-312)||(36379406-36379455)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 32047050 - 32047248
Alignment:
Q  30 cctaaaccatactctcatccatcaatttgattcctattgagagactatataaaatgtaaaaattgctttaattattttgttaaatgtcaataaatgtatt 129  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32047050 cctaaaccatactctcatccatcaatttgattcctattaagagactatataaaatgtaaaaattgctttaattattttgttaaatgtcaataaatgtatt 32047149  T
Q  130 ttacaaacatatatcggcatctcttactctaaaataattatataaacaatgatatttaaacatcctttatcttttcacatgcattcaatacttcatgtt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32047150 ttacaaacatatatcggcatctcttactctaaaataattatataaacaatgatatttaaacatcctttatcttttcacatgcattcaatacttcatgtt 32047248  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 224 - 322
Target Start/End: Original strand, 32047271 - 32047373
Alignment:
Q  224 atgttaaaagagttctttcgga-tactcttcaagcataaaaaata---gtaaaattttatgaaagattgtccatttattgcattgaaaattgaaatcttt 319  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||   |||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  32047271 atgttaaaagagttctttcggaatactctttaagcataaaaaatactagtaagattttatgaaagattgtccatttattgcattgaaaattaaaatcttt 32047370  T
Q  320 aaa 322  Q
    |||    
T  32047371 aaa 32047373  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 31492928 - 31493002
Alignment:
Q  246 tactcttcaagcataaaaaatagtaaaattttatgaaagattgtccatttattgcattgaaaattgaaatcttta 320  Q
    ||||||| |||||| |||||||||||||||||||||||| |||| ||||||||| |||  |||||||||||||||    
T  31492928 tactctttaagcatcaaaaatagtaaaattttatgaaagtttgtgcatttattgtattagaaattgaaatcttta 31493002  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 321
Target Start/End: Complemental strand, 48872276 - 48872201
Alignment:
Q  246 tactcttcaagcataaaaaatagtaaaattttatgaaagattgtccatttattgcattgaaaattgaaatctttaa 321  Q
    ||||||| |||||| |||| | |||| |||||||||||| || | |||||||| ||||| |||||||| |||||||    
T  48872276 tactctttaagcatcaaaagtggtaagattttatgaaagtttatgcatttattacattggaaattgaagtctttaa 48872201  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 10895402 - 10895364
Alignment:
Q  272 aattttatgaaagattgtccatttattgcattgaaaatt 310  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  10895402 aattttatgaaagtttgtgcatttattgcattgaaaatt 10895364  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 34046446 - 34046401
Alignment:
Q  273 attttatgaaagattgtccatttattgcattgaaaattgaaatctt 318  Q
    |||||||||||| |||| |||||||||| ||| |||||||||||||    
T  34046446 attttatgaaagtttgtgcatttattgctttggaaattgaaatctt 34046401  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 11867872 - 11867812
Alignment:
Q  243 ggatactcttcaagcataaaaaatagtaaaattttatgaaagattgtccatttattgcatt 303  Q
    |||||||||| ||||||  ||| | |||| |||||||||||| |||| |||||||||||||    
T  11867872 ggatactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcatt 11867812  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 14758656 - 14758604
Alignment:
Q  263 aaatagtaaaattttatgaaagattgtccatttattgcattgaaaattgaaat 315  Q
    |||||||||| |||||||||| ||||| |||| | ||||| ||||||||||||    
T  14758656 aaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaat 14758604  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 25299056 - 25299103
Alignment:
Q  273 attttatgaaagattgtccatttattgcattgaaaattgaaatcttta 320  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  25299056 attttatgaaagtttgtgcatttattgcattgaaaattgaaatcttta 25299103  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 53766685 - 53766752
Alignment:
Q  246 tactcttcaagcataaaaaatagtaaaattttatgaaagattgtccatttattgcattgaaaattgaa 313  Q
    ||||||| ||||||  ||||| |||| |||||||||||| ||||  ||||||||||||||||||||||    
T  53766685 tactctttaagcatctaaaatggtaatattttatgaaagtttgtgtatttattgcattgaaaattgaa 53766752  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 22288482 - 22288540
Alignment:
Q  262 aaaatagtaaaattttatgaaagattgtccatttattgcattgaaaattgaaatcttta 320  Q
    ||||| |||| |||||||||||| |||| ||||||||  ||||||||||||||||||||    
T  22288482 aaaatggtaagattttatgaaagtttgtgcatttattatattgaaaattgaaatcttta 22288540  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 42676704 - 42676751
Alignment:
Q  274 ttttatgaaagattgtccatttattgcattgaaaattgaaatctttaa 321  Q
    ||||||||||| |||| |||||||| |||||||||||||||| |||||    
T  42676704 ttttatgaaagtttgtgcatttattacattgaaaattgaaatttttaa 42676751  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 50941771 - 50941726
Alignment:
Q  268 gtaaaattttatgaaagattgtccatttattgcattgaaaattgaa 313  Q
    |||| |||||||||||| |||| |||||||||||||| ||||||||    
T  50941771 gtaagattttatgaaagtttgtgcatttattgcattggaaattgaa 50941726  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 41207822 - 41207764
Alignment:
Q  262 aaaatagtaaaattttatgaaagattgtccatttattgcattgaaaattgaaatcttta 320  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||||| || ||||||    
T  41207822 aaaatagtaaaattttatgaatgtttgtgcatttattgcattgaaaattaaagtcttta 41207764  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 35139042 - 35139089
Alignment:
Q  273 attttatgaaagattgtccatttattgcattgaaaattgaaatcttta 320  Q
    |||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  35139042 attttatgaaagtttgtgcatttattgcattgaaaattgaagtcttta 35139089  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 28459985 - 28460059
Alignment:
Q  247 actcttcaagcataaaaaatagtaaaattttatgaaagattgtccatttattgcattgaaaattgaaatctttaa 321  Q
    |||||| |||||| |||| | |||| ||||||| |||| |||| |||||||||||||| |||||||| |||||||    
T  28459985 actctttaagcatcaaaagtggtaagattttattaaagtttgtgcatttattgcattggaaattgaagtctttaa 28460059  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 36782782 - 36782822
Alignment:
Q  273 attttatgaaagattgtccatttattgcattgaaaattgaa 313  Q
    |||||||||||| |||| ||||||||| |||||||||||||    
T  36782782 attttatgaaagtttgtgcatttattgtattgaaaattgaa 36782822  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 949875 - 949947
Alignment:
Q  249 tcttcaagcataaaaaatagtaaaattttatgaaagattgtccatttattgcattgaaaattgaaatctttaa 321  Q
    |||| ||||||  ||||| ||||  ||||||||||| |||| ||||||||||||||||||||||| |||||||    
T  949875 tctttaagcatccaaaatggtaaggttttatgaaagtttgtgcatttattgcattgaaaattgaagtctttaa 949947  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 51291184 - 51291125
Alignment:
Q  262 aaaatagtaaaattttatgaaagattgtccatttattgcattgaaaattgaaatctttaa 321  Q
    ||||| |||| |||||||||||| |||| |||||||||||||| |||||||| |||||||    
T  51291184 aaaatggtaagattttatgaaagtttgtgcatttattgcattggaaattgaagtctttaa 51291125  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 14964416 - 14964368
Alignment:
Q  273 attttatgaaagattgtccatttattgcattgaaaattgaaatctttaa 321  Q
    |||||||||||| |||| |||||||| |||||||||||||| |||||||    
T  14964416 attttatgaaagtttgtgcatttattacattgaaaattgaagtctttaa 14964368  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 20785019 - 20784972
Alignment:
Q  273 attttatgaaagattgtccatttattgcattgaaaattgaaatcttta 320  Q
    ||||||| |||| |||| ||||||||||||||||||||||| ||||||    
T  20785019 attttataaaagtttgttcatttattgcattgaaaattgaagtcttta 20784972  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 8143751 - 8143704
Alignment:
Q  274 ttttatgaaagattgtccatttattgcattgaaaattgaaatctttaa 321  Q
    ||||||||||| |||| |||||||||||||||||||| ||||||||||    
T  8143751 ttttatgaaagtttgtacatttattgcattgaaaattaaaatctttaa 8143704  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 5924842 - 5924768
Alignment:
Q  247 actcttcaagcataaaaaatagtaaaattttatgaaagattgtccatttattgcattgaaaattgaaatctttaa 321  Q
    |||||| |||||  |||| | ||||||||||||||||| |||| ||| ||||| |||||||||| ||||||||||    
T  5924842 actctttaagcaccaaaagtggtaaaattttatgaaagtttgtgcatatattgtattgaaaattaaaatctttaa 5924768  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 34185040 - 34185093
Alignment:
Q  268 gtaaaattttatgaaagattgtccatttattgcattgaaaattgaaatctttaa 321  Q
    |||| |||| ||||||| |||| |||||||||||||| |||||||| |||||||    
T  34185040 gtaagatttaatgaaagtttgtgcatttattgcattggaaattgaagtctttaa 34185093  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 34534801 - 34534852
Alignment:
Q  269 taaaattttatgaaagattgtccatttattgcattgaaaattgaaatcttta 320  Q
    ||||||||||| |||| |||| |||||||||||||| |||||||| ||||||    
T  34534801 taaaattttataaaagtttgtgcatttattgcattggaaattgaagtcttta 34534852  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 32724540 - 32724474
Alignment:
Q  254 aagcataaaaaatagtaaaattttatgaaagattgtccatttattgcattgaaaattgaaatcttta 320  Q
    |||||| |||| |||||| |||||||||||| ||||  |||||||| |||  |||||||||||||||    
T  32724540 aagcatcaaaagtagtaagattttatgaaagtttgtgtatttattgaattagaaattgaaatcttta 32724474  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 17003477 - 17003437
Alignment:
Q  273 attttatgaaagattgtccatttattgcattgaaaattgaa 313  Q
    |||||||||||| |||| |||||||||||||| ||||||||    
T  17003477 attttatgaaagtttgtgcatttattgcattggaaattgaa 17003437  T

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Target: scaffold0262 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 17656 - 17590
Alignment:
Q  244 gatactcttcaagcataaaaaatagtaaaattttatgaaagattgtccatttattgcattgaaaatt 310  Q
    ||||||||| || ||| |||| |||||| |||||||||||  |||| |||||||| |||||||||||    
T  17656 gatactctttaaacatcaaaagtagtaagattttatgaaattttgtacatttattacattgaaaatt 17590  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 3723467 - 3723401
Alignment:
Q  254 aagcataaaaaatagtaaaattttatgaaagattgtccatttattgcattgaaaattgaaatcttta 320  Q
    ||||| ||||||| |||| |||||| ||||  ||||  |||||||||||||||||||||| ||||||    
T  3723467 aagcacaaaaaatggtaagattttacgaaaatttgtgtatttattgcattgaaaattgaagtcttta 3723401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 36379455 - 36379406
Alignment:
Q  263 aaatagtaaaattttatgaaagattgtccatttattgcattgaaaattga 312  Q
    |||| |||| |||||||||||| |||| |||||||| |||||||||||||    
T  36379455 aaatggtaagattttatgaaagtttgttcatttattacattgaaaattga 36379406  T

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