View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0940_low_19 (Length: 352)
Name: NF0940_low_19
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 93 - 255
Target Start/End: Complemental strand, 4797054 - 4796893
Alignment:
| Q |
93 |
tgctgtcatattcattgtgacaaatgattccatccaatccatgaaaggagggaggcagaactcaaaacagagtgtgtagcatatatgataacataactcc |
192 |
Q |
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| T |
4797054 |
tgctgtcatattcattgtcacaaatgattccatccaatccatgaaaggagggagacagaactcaaaagagagtgtgtagcatatatgataacataactcc |
4796955 |
T |
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| Q |
193 |
atcatttccattatttctatcaacaagagagttaacattacaaatcaaatattaacacataaa |
255 |
Q |
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| T |
4796954 |
atcatttccattatttctatgaacaagagag-taacattacaaatcaaacattaacacataaa |
4796893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 4788796 - 4788913
Alignment:
| Q |
93 |
tgctgtcatattcattgtgacaaatgattccatccaatccatgaaaggagggaggcagaactcaaaacagagtgtgtagcatatatgataacataactcc |
192 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4788796 |
tgctgtcatattcattgtcacaaatgattccatccaatccatgaaaggagggagacagaactcaaaacagagtgtgtagcatatatgataacataactcc |
4788895 |
T |
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| Q |
193 |
atcatttccattatttct |
210 |
Q |
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| T |
4788896 |
atcatttccattgtttct |
4788913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 93 - 203
Target Start/End: Complemental strand, 4791529 - 4791419
Alignment:
| Q |
93 |
tgctgtcatattcattgtgacaaatgattccatccaatccatgaaaggagggaggcagaactcaaaacagagtgtgtagcatatatgataacataactcc |
192 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4791529 |
tgctgtcatattcattgtcacaaatgattccatccaatccatgaaaggagggagacagaactcaaaacagagtgtgtagcatatatgataacacaactcc |
4791430 |
T |
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| Q |
193 |
atcatttccat |
203 |
Q |
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| T |
4791429 |
atcatttccat |
4791419 |
T |
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