View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0940_low_22 (Length: 348)
Name: NF0940_low_22
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 83 - 319
Target Start/End: Complemental strand, 39812919 - 39812683
Alignment:
| Q |
83 |
tgaaccagaatcttgcttccttatcttgcttaagacacgtttcacttggtcttcgttactgccaccgcttgatgcagcaaattcaccatcaattgaaagc |
182 |
Q |
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| T |
39812919 |
tgaaccagaatcttgcttccttatcttgcttaagacacgtttcacttggtcttcgttactgccaccgcttgatgcagcaaattcaccatcaattgaaagc |
39812820 |
T |
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| Q |
183 |
ctaagtgacatgtcctgaacatccttaagtgaatcattgaaagactcttcaacatctacatcatcttcagtagtagtagtttgccattgtggatgcctca |
282 |
Q |
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| T |
39812819 |
ctaagtgacatgtcctgaacatccttaagtgaatcattgaaagactcttcaacatctacatcatcttcagtagtagtagtttgccattgtggatgcctca |
39812720 |
T |
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| Q |
283 |
ttctacacgcatccacgcgtgtcaaataagttcggca |
319 |
Q |
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| T |
39812719 |
ttctacacgcatccacgcgtgtcaaataagttcggca |
39812683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 283
Target Start/End: Complemental strand, 15800825 - 15800707
Alignment:
| Q |
165 |
tcaccatcaattgaaagcctaagtgacatgtcctgaacatccttaagtgaatcattgaaagactcttcaacatctacatcatcttcagtagtagtagttt |
264 |
Q |
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| T |
15800825 |
tcaccatcaatagagagcctaagagacatgtcctgcacgtctttaagtgaatcattgaatgactggtcgacagttatatcgtctcctggagtagtagttt |
15800726 |
T |
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| Q |
265 |
gccattgtggatgcctcat |
283 |
Q |
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| T |
15800725 |
gccattgtggatgcctcat |
15800707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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