View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0940_low_27 (Length: 299)
Name: NF0940_low_27
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 7038216 - 7038332
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
7038216 |
ttaatcaccgtatctactgctggaatatctagtcccctgctagctaagtcattacaaagaagaattttgcagttcccagacttgaacgcattcaaggctt |
7038315 |
T |
|
| Q |
203 |
caagtctctttgcctat |
219 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
7038316 |
caagtctctttgcctat |
7038332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 7877186 - 7877302
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
7877186 |
ttaatcaccatatctattgctggaatatctagtcccctactagctacgtcattacaaaggagaattttgcagttcccagacttgaacgcattcaaggctt |
7877285 |
T |
|
| Q |
203 |
caagtctctttgcctat |
219 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
7877286 |
caagtctttttgcctat |
7877302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 7315148 - 7315264
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| | ||| | | |||| ||||||||||||| ||||| | |||||||||||| |||||||||| | |
|
|
| T |
7315148 |
ttaatcaccatatctactgctggaatatctagtcccttactaacgaagtcactacaaaggagaatattgcactccccagacttcaatgcattcaaggatc |
7315247 |
T |
|
| Q |
203 |
caagtctctttgcctat |
219 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
7315248 |
caagtttctttgcctat |
7315264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 1381659 - 1381775
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||| | ||| | |||| ||||||||||||| ||| | | ||||||||| ||||||||||| | | |
|
|
| T |
1381659 |
ttaatcaccatatctaccgctggaatatctagtcccttactaaggaagtcactacaaaggagaatattgtactccccagacttgaacgcattcaatgatc |
1381758 |
T |
|
| Q |
203 |
caagtctctttgcctat |
219 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
1381759 |
taagtttctttgcctat |
1381775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 30649083 - 30648972
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| ||| |||||||| ||||||||||||| ||||| | ||||||||| ||| |||||||||| |
|
|
| T |
30649083 |
ttaatcaccatatctactgctggaatatccagtcccctactagctacgtcagtacaaaggagaatattgcaatccccagacttgaacttattcaaggctc |
30648984 |
T |
|
| Q |
203 |
caagtctctttg |
214 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
30648983 |
caagtcgctttg |
30648972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 20519509 - 20519620
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||| ||||| | ||| ||||| ||| |||||||||| |
|
|
| T |
20519509 |
ttaatcaccatatctactgctgggatatccagtcccctgctagctacgtcagtacaaaggagaatattgcaatccccggacttgaacttattcaaggctc |
20519608 |
T |
|
| Q |
203 |
caagtctctttg |
214 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
20519609 |
caagtcgctttg |
20519620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 29378328 - 29378444
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||| ||| || | ||| ||||||||||||| ||| | || |||||||| |||||||||| |||| |
|
|
| T |
29378328 |
ttaatcaccatatctaccgctggaatatctagtcccctcctagctgcttcactacaaaggagaatattgaactttccagacttgaacgcattcagggctc |
29378427 |
T |
|
| Q |
203 |
caagtctctttgcctat |
219 |
Q |
| |
|
| ||| ||||||||||| |
|
|
| T |
29378428 |
ctagtttctttgcctat |
29378444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University