View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0940_low_3 (Length: 603)
Name: NF0940_low_3
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 9 - 552
Target Start/End: Original strand, 31526130 - 31526673
Alignment:
| Q |
9 |
caataatatgaatataaatagaacactttaccaatattctatcaacaacttttgagagaaactccacttgatgtgtcacaagaatgactgttttctctct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31526130 |
caataatatgaatataaatagaacacttcaccaatattctatcaacaacttttgagagaaactccacttgatgtgtcacaagaatgactgttttctctct |
31526229 |
T |
|
| Q |
109 |
tagagcagtcataatgcagtcctgtaattttgtagatgcagttagtttgatgcaccatgatgaggacaataggtttattataatactaattaacatgaaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31526230 |
tagagcagtcataatgcagtcctgtaattttgtagatgcagttagtttgatgcaccatgatgaggacaataggtttattataatactaattaacatgaaa |
31526329 |
T |
|
| Q |
209 |
aaagtgatagctccttacattgaacagaatagcagcagtgtgcgcgtcaactgcgctgaaagggtcatcgaggagaaagatatcagcatcgttgtaaact |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
31526330 |
aaagtgatagctccttacattgaacagaatagcagcagtgtgcgcgtcaactgcgctgaaagggtcatcaaggagatagatatcagcatcgttgtaaact |
31526429 |
T |
|
| Q |
309 |
gctcgagctagttgaatcctttgcttttgtcctccacttaggttaatccctctttgacctatttctgtaagatcaccatgactcaaatcattgatatctt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31526430 |
gctcgagctagttgaatcctttgcttttgtcctccacttaggttaatccctctttgacctatttctgtaagatcaccatgactcaaatcattgatatctt |
31526529 |
T |
|
| Q |
409 |
cgtccaaggcacaagctttaatagcattctcatatcttgctttgttcattggcttgccaaagagtatattatctcgaacggttccactttgtatccatga |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31526530 |
cgtccaaggcacaagctttaatagcattctcatatcttgctttgttcattggcttgccaaagagtatattatctcgaacggttccactttgtatccatga |
31526629 |
T |
|
| Q |
509 |
agattgagaaacataggcaagagtgccacctacattaacctgtt |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31526630 |
agattgagaaacataggcaagagtgccacctacattaacctgtt |
31526673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 11756823 - 11756679
Alignment:
| Q |
243 |
gcagtgtgcgcgtcaactgcgctgaaagggtcatcgaggagaaagatatcagcatcgttgtaaactgctcgagctagttgaatcctttgcttttgtcctc |
342 |
Q |
| |
|
||||||||||| ||||| || |||||||| ||||| | |||| | | |||||||| | |||| |||||||| |||||||| || |||||||| || | |
|
|
| T |
11756823 |
gcagtgtgcgcatcaacagcactgaaaggatcatccaagagatatacatcagcattttgataaagagctcgagcaagttgaattctctgcttttgacccc |
11756724 |
T |
|
| Q |
343 |
cacttaggttaatccctctttgacctatttctgtaagatcaccat |
387 |
Q |
| |
|
||||||| |||| ||||| | ||||| || || |||||||||| |
|
|
| T |
11756723 |
cacttagattaacacctctctctcctatctcggttagatcaccat |
11756679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 235; Significance: 1e-129; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 33 - 550
Target Start/End: Complemental strand, 5314151 - 5313643
Alignment:
| Q |
33 |
actttaccaatattctatcaacaacttttgagagaaactccacttgatgtgtcacaagaatgactgttttctctcttagagcagtcataatgcagtcctg |
132 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||||||||||||||||||| | |||||||||||| |||||||| || ||||| | ||||||||| |
|
|
| T |
5314151 |
actttaccaatattgtatcaac---ttctgagagaaactccacttgatgtgtcactaaaatgactgttttttctcttagggctgtcattacgcagtcctg |
5314055 |
T |
|
| Q |
133 |
taattttgtagatgcagttagtttgatgcaccatgatgaggacaataggtttattataatactaattaacatgaaaaaagtgatagctccttacattgaa |
232 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| | |||||||| | |||| | || |||||||||||| ||| ||||| |||||||||||||| |
|
|
| T |
5314054 |
taattttgta-atgcagttagtttgatacactaaattgaggacacaa----tattttcattgtaattaacatgataaa-gtgatttctccttacattgaa |
5313961 |
T |
|
| Q |
233 |
cagaatagcagcagtgtgcgcgtcaactgcgctgaaagggtcatcgaggagaaagatatcagcatcgttgtaaactgctcgagctagttgaatcctttgc |
332 |
Q |
| |
|
|||||||||||| ||||| || ||||| || |||||||| |||||||||||| ||||||||||||| ||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
5313960 |
cagaatagcagctgtgtgtgcatcaacagcactgaaaggatcatcgaggagatagatatcagcatcattgtagactgctctagctatttgaatcctttgc |
5313861 |
T |
|
| Q |
333 |
ttttgtcctccacttaggttaatccctctttgacctatttctgtaagatcaccatgactcaaatcattgatatcttcgtccaaggcacaagctttaatag |
432 |
Q |
| |
|
|| ||||||||||||| |||||||||||| |||||||||||||||||||| |||| || ||||||| ||||| | || |||||||| ||||||| | |
|
|
| T |
5313860 |
ttctgtcctccacttacgttaatccctctctgacctatttctgtaagatcgccatagctaaaatcatcaatatccttatctaaggcacatactttaatgg |
5313761 |
T |
|
| Q |
433 |
cattctcatatcttgctttgttcattggcttgccaaagagtatattatctcgaacggttccactttgtatccatgaagattgagaaacataggcaagagt |
532 |
Q |
| |
|
||||||||||| || |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || | |
|
|
| T |
5313760 |
cattctcatatttttctttgtccattggcttgccaaagagtatattatctcgaactgttccactttgtatccaagaagattgagaaacataggctagtgc |
5313661 |
T |
|
| Q |
533 |
gccacctacattaacctg |
550 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
5313660 |
gctacctacattaacctg |
5313643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 197 - 552
Target Start/End: Original strand, 5290195 - 5290550
Alignment:
| Q |
197 |
attaacatgaaaaaagtgatagctccttacattgaacagaatagcagcagtgtgcgcgtcaactgcgctgaaagggtcatcgaggagaaagatatcagca |
296 |
Q |
| |
|
|||||||||| ||||||| | | ||||||||||| || || ||||| || || || |||||||| |||||||| ||||| |||||| ||||||||||| |
|
|
| T |
5290195 |
attaacatgattaaagtgacattttcttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaaggagatagatatcagca |
5290294 |
T |
|
| Q |
297 |
tcgttgtaaactgctcgagctagttgaatcctttgcttttgtcctccacttaggttaatccctctttgacctatttctgtaagatcaccatgactcaaat |
396 |
Q |
| |
|
|| ||||| ||||||| ||||||||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||||||||||||||| || |||| |
|
|
| T |
5290295 |
tcattgtagactgctctagctagttgaatcctttgcttttgtcctccactcatgttaatccctctctgaccgatttctgtaagatcaccatggctaaaat |
5290394 |
T |
|
| Q |
397 |
cattgatatcttcgtccaaggcacaagctttaatagcattctcatatcttgctttgttcattggcttgccaaagagtatattatctcgaacggttccact |
496 |
Q |
| |
|
|||||||||| | || |||||||||||||| || || |||||||||||| ||| | |||||||||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
5290395 |
cattgatatccttatctaaggcacaagctttgattgctttctcatatcttcttttatccattggcttgccaaagagtatattttcttgaactgttccact |
5290494 |
T |
|
| Q |
497 |
ttgtatccatgaagattgagaaacataggcaagagtgccacctacattaacctgtt |
552 |
Q |
| |
|
||||||||| |||||||||||||||||||| || |||||||| ||||||||||||| |
|
|
| T |
5290495 |
ttgtatccaagaagattgagaaacataggccagtgtgccaccaacattaacctgtt |
5290550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 222 - 552
Target Start/End: Original strand, 5282633 - 5282963
Alignment:
| Q |
222 |
cttacattgaacagaatagcagcagtgtgcgcgtcaactgcgctgaaagggtcatcgaggagaaagatatcagcatcgttgtaaactgctcgagctagtt |
321 |
Q |
| |
|
||||||||||| || || ||||| || || || |||||||| || ||||| ||||| |||||| | ||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
5282633 |
cttacattgaatagtattgcagctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatcattgtagactgctctagctagtt |
5282732 |
T |
|
| Q |
322 |
gaatcctttgcttttgtcctccacttaggttaatccctctttgacctatttctgtaagatcaccatgactcaaatcattgatatcttcgtccaaggcaca |
421 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| || |||||||||||||| | || |||||||| |
|
|
| T |
5282733 |
gaatcctttgcttttgtcctccacttatattgatccctctctgacctatttctgtaagatcaccatggctgaaatcattgatatccttatctaaggcaca |
5282832 |
T |
|
| Q |
422 |
agctttaatagcattctcatatcttgctttgttcattggcttgccaaagagtatattatctcgaacggttccactttgtatccatgaagattgagaaaca |
521 |
Q |
| |
|
||||||||| || ||||||||||||| ||||| ||| | ||||||||| |||||||||||| |||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
5282833 |
agctttaattgctttctcatatcttgttttgtccatggtcttgccaaatagtatattatcttgaactgttccactttgtatccaagaagactgagaaaca |
5282932 |
T |
|
| Q |
522 |
taggcaagagtgccacctacattaacctgtt |
552 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
5282933 |
taggcaagagttccacctacattaacctgtt |
5282963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 222 - 552
Target Start/End: Original strand, 14949383 - 14949713
Alignment:
| Q |
222 |
cttacattgaacagaatagcagcagtgtgcgcgtcaactgcgctgaaagggtcatcgaggagaaagatatcagcatcgttgtaaactgctcgagctagtt |
321 |
Q |
| |
|
||||||||||| || || ||||| || || || |||||||| |||||||| ||||| || ||| ||||||||||||| ||||| ||||||| ||| || | |
|
|
| T |
14949383 |
cttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaagaagatagatatcagcatcattgtagactgctctagcaagct |
14949482 |
T |
|
| Q |
322 |
gaatcctttgcttttgtcctccacttaggttaatccctctttgacctatttctgtaagatcaccatgactcaaatcattgatatcttcgtccaaggcaca |
421 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||| || |||||||||||||| | || || ||||| |
|
|
| T |
14949483 |
gaatcctttgcttttgtcctccactcatgttaatccctctctcacctatttctgtaagatcaccatggctaaaatcattgatatccttatctaaagcaca |
14949582 |
T |
|
| Q |
422 |
agctttaatagcattctcatatcttgctttgttcattggcttgccaaagagtatattatctcgaacggttccactttgtatccatgaagattgagaaaca |
521 |
Q |
| |
|
||||||||| || ||||||||||||| ||||| ||||| |||||||||||||||||||||| |||| ||||||||||||||||| |||| ||| |||||| |
|
|
| T |
14949583 |
agctttaattgctttctcatatcttgttttgtccattgccttgccaaagagtatattatcttgaactgttccactttgtatccaagaagtttgggaaaca |
14949682 |
T |
|
| Q |
522 |
taggcaagagtgccacctacattaacctgtt |
552 |
Q |
| |
|
||||| || |||||||||||||||||||||| |
|
|
| T |
14949683 |
taggctagtgtgccacctacattaacctgtt |
14949713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 222 - 552
Target Start/End: Complemental strand, 15125992 - 15125662
Alignment:
| Q |
222 |
cttacattgaacagaatagcagcagtgtgcgcgtcaactgcgctgaaagggtcatcgaggagaaagatatcagcatcgttgtaaactgctcgagctagtt |
321 |
Q |
| |
|
||||||||||| || || ||||| || || || |||||||| |||||||| ||||| || ||| ||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
15125992 |
cttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaagaagatagatatcagcatcattgtagactgctctagctagtt |
15125893 |
T |
|
| Q |
322 |
gaatcctttgcttttgtcctccacttaggttaatccctctttgacctatttctgtaagatcaccatgactcaaatcattgatatcttcgtccaaggcaca |
421 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||| || || ||||||| |||||| | || || ||||| |
|
|
| T |
15125892 |
gaatcctttgcttttgtcctccactcatgttaatccctctctcacctatttctgtaagatcaccgtggctaaaatcatcgatatccttatctaaagcaca |
15125793 |
T |
|
| Q |
422 |
agctttaatagcattctcatatcttgctttgttcattggcttgccaaagagtatattatctcgaacggttccactttgtatccatgaagattgagaaaca |
521 |
Q |
| |
|
||||||||| || ||||||||||||| ||||| |||| ||||||||| |||||||||||| |||| ||||||||||||||||| ||||||||||| ||| |
|
|
| T |
15125792 |
agctttaattgctttctcatatcttgttttgtccatttccttgccaaatagtatattatcttgaactgttccactttgtatccaagaagattgagagaca |
15125693 |
T |
|
| Q |
522 |
taggcaagagtgccacctacattaacctgtt |
552 |
Q |
| |
|
||||| || ||||||||||||| |||||||| |
|
|
| T |
15125692 |
taggctagtgtgccacctacataaacctgtt |
15125662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 195 - 552
Target Start/End: Complemental strand, 5306790 - 5306433
Alignment:
| Q |
195 |
taattaacatgaaaaaagtgatagctccttacattgaacagaatagcagcagtgtgcgcgtcaactgcgctgaaagggtcatcgaggagaaagatatcag |
294 |
Q |
| |
|
||||||||||| |||||| ||| | ||||||||||| || || ||||| || || || |||||||| |||||||| ||||| |||||| ||||||| | |
|
|
| T |
5306790 |
taattaacatggtaaaagttatattttcttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaaggagatagatatctg |
5306691 |
T |
|
| Q |
295 |
catcgttgtaaactgctcgagctagttgaatcctttgcttttgtcctccacttaggttaatccctctttgacctatttctgtaagatcaccatgactcaa |
394 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||| ||||||||||||||||| | || |||||||| || || |||||||||||||||||||| || || |
|
|
| T |
5306690 |
catcactgtagactgctctagctagttgaatcctctgcttttgtcctccactcatattgatccctctctggccaatttctgtaagatcaccatggctgaa |
5306591 |
T |
|
| Q |
395 |
atcattgatatcttcgtccaaggcacaagctttaatagcattctcatatcttgctttgttcattggcttgccaaagagtatattatctcgaacggttcca |
494 |
Q |
| |
|
|||||||| || | || || |||||||||||||| || || | ||||||| ||| | |||||||||||||||||||||||| ||| |||| |||||| |
|
|
| T |
5306590 |
atcattgaagtccttatctaaagcacaagctttaattgctttttgatatcttcttttatccattggcttgccaaagagtatattttcttgaactgttcca |
5306491 |
T |
|
| Q |
495 |
ctttgtatccatgaagattgagaaacataggcaagagtgccacctacattaacctgtt |
552 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5306490 |
ctttgtatccaagaagattgagaaacataggcaagtgtgccacctacattaacctgtt |
5306433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 222 - 552
Target Start/End: Complemental strand, 11833449 - 11833131
Alignment:
| Q |
222 |
cttacattgaacagaatagcagcagtgtgcgcgtcaactgcgctgaaagggtcatcgaggagaaagatatcagcatcgttgtaaactgctcgagctagtt |
321 |
Q |
| |
|
||||||||||| || || || || || || || |||||||| |||||||| ||||| |||||| ||||||| ||||| || || ||||||| |||||||| |
|
|
| T |
11833449 |
cttacattgaaaagtattgctgctgtatgagcatcaactgcactgaaaggatcatcaaggagatagatatctgcatcattatagactgctctagctagtt |
11833350 |
T |
|
| Q |
322 |
gaatcctttgcttttgtcctccacttaggttaatccctctttgacctatttctgtaagatcaccatgactcaaatcattgatatcttcgtccaaggcaca |
421 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||| || |||||||||||||| | | |||| ||| |
|
|
| T |
11833349 |
gaatcctttgcttttgtcctccacttatattgatccctctctgaccaatttctgtaagatcaccatggctaaaatcattgatatccttatgtaaggaaca |
11833250 |
T |
|
| Q |
422 |
agctttaatagcattctcatatcttgctttgttcattggcttgccaaagagtatattatctcgaacggttccactttgtatccatgaagattgagaaaca |
521 |
Q |
| |
|
||||||||| || ||||||||||||| ||||| ||| | |||||| |||| |||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
11833249 |
agctttaattgctttctcatatcttgttttgtccatggtcttgcc------------atcttgaactgttccactttgtatccaagaagattgagaaaca |
11833162 |
T |
|
| Q |
522 |
taggcaagagtgccacctacattaacctgtt |
552 |
Q |
| |
|
||||||||||| ||||||| |||||||||| |
|
|
| T |
11833161 |
taggcaagagtttcacctaccttaacctgtt |
11833131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 234 - 526
Target Start/End: Original strand, 5351543 - 5351835
Alignment:
| Q |
234 |
agaatagcagcagtgtgcgcgtcaactgcgctgaaagggtcatcgaggagaaagatatcagcatcgttgtaaactgctcgagctagttgaatcctttgct |
333 |
Q |
| |
|
||||| |||||||| || || || ||||| || ||||||||||| || ||| | | ||||||||| ||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
5351543 |
agaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagctagttgaattctttgct |
5351642 |
T |
|
| Q |
334 |
tttgtcctccacttaggttaatccctctttgacctatttctgtaagatcaccatgactcaaatcattgatatcttcgtccaaggcacaagctttaatagc |
433 |
Q |
| |
|
|||| |||||||| | ||||| ||||| || ||||||||||||||||||||||| || ||| ||| ||||| | |||||| ||||| ||||| || || |
|
|
| T |
5351643 |
tttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagcacatgcttttattgc |
5351742 |
T |
|
| Q |
434 |
attctcatatct-tgctttgttcattggcttgccaaagagtatattatctcgaacggttccactttgtatccatgaagattgagaaacataggc |
526 |
Q |
| |
|
|||||||||||| | | || | |||| || ||||||||||| ||||| |||| |||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
5351743 |
attctcatatctgttcctt-tccattaattttccaaagagtatgttatcacgaattgttccactttgtatccatgatgtttgagaaacataggc |
5351835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 5282009 - 5282131
Alignment:
| Q |
54 |
caacttttgagagaaactccacttgatgtgtcacaagaatgactgttttctctcttagagcagtcataatgcagtcctgtaattttgtagatgcagttag |
153 |
Q |
| |
|
|||||| ||||||||||||||||||||| || || |||||||||||||||||||||| |||| |||| | |||||||||||| ||||||| |||||||| |
|
|
| T |
5282009 |
caacttctgagagaaactccacttgatgagtaactagaatgactgttttctctcttaaagcattcatgacacagtcctgtaatgttgtagaggcagttag |
5282108 |
T |
|
| Q |
154 |
tttgatgcaccatgatgaggaca |
176 |
Q |
| |
|
|||||||| ||| ||||||||| |
|
|
| T |
5282109 |
tttgatgcgccaaaatgaggaca |
5282131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 15126123 - 15126021
Alignment:
| Q |
62 |
gagagaaactccacttgatgtgtcacaagaatgactgttttctctcttagagcagtcataatgcagtcctgtaattttgtagatgcagttagtttgatgc |
161 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||| ||||||| ||||||||| | |||||||||||| |||||||||||||||||||||| | |
|
|
| T |
15126123 |
gagagaaactccacttgatgagtaactagaatgactgttttgtctcttaaagcagtcatgacacagtcctgtaatgttgtagatgcagttagtttgatac |
15126024 |
T |
|
| Q |
162 |
acc |
164 |
Q |
| |
|
||| |
|
|
| T |
15126023 |
acc |
15126021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 14949246 - 14949354
Alignment:
| Q |
56 |
acttttgagagaaactccacttgatgtgtcacaagaatgactgttttctctcttagagcagtcataatgcagtcctgtaattttgtagatgcagttagtt |
155 |
Q |
| |
|
|||| ||||||||||||||||||||| || || ||||||||||| || ||||||| ||||||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
14949246 |
acttctgagagaaactccacttgatgagtaacgagaatgactgtcttgtctcttaaagcagtcatgacacagtcctgtaatgttgtagatgcagttagtt |
14949345 |
T |
|
| Q |
156 |
tgatgcacc |
164 |
Q |
| |
|
|||| |||| |
|
|
| T |
14949346 |
tgatacacc |
14949354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 5290010 - 5290112
Alignment:
| Q |
54 |
caacttttgagagaaactccacttgatgtgtcacaagaatgactgttttctctcttagagcagtcataatgcagtcctgtaattttgtagatgcagttag |
153 |
Q |
| |
|
|||||| ||||||||||||||||||||| || || |||||||||||||||||||||| ||||||||| | || ||||||||| ||| |||||||||||| |
|
|
| T |
5290010 |
caacttctgagagaaactccacttgatgagtaactagaatgactgttttctctcttaaagcagtcatgacacaatcctgtaatgttgcagatgcagttag |
5290109 |
T |
|
| Q |
154 |
ttt |
156 |
Q |
| |
|
||| |
|
|
| T |
5290110 |
ttt |
5290112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 5307338 - 5307212
Alignment:
| Q |
54 |
caacttttgagagaaactccacttgatgtgtcacaagaatgactgttttctctcttagagcagtcataatgcagtcctgt---aattttgtagatgcagt |
150 |
Q |
| |
|
|||||| ||||||||||||||||||||| || || ||||| | |||||||| ||||| | || |||| | ||||||||| ||| ||||||||||||| |
|
|
| T |
5307338 |
caacttctgagagaaactccacttgatgagtaactagaataattgttttctttcttaaaacattcatgacacagtcctgtagcaatgttgtagatgcagt |
5307239 |
T |
|
| Q |
151 |
tagtttgatgcaccatgatgaggacaa |
177 |
Q |
| |
|
||||||||| || || |||||||||| |
|
|
| T |
5307238 |
tagtttgatacaacaaaatgaggacaa |
5307212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 5351373 - 5351428
Alignment:
| Q |
65 |
agaaactccacttgatgtgtcacaagaatgactgttttctctcttagagcagtcat |
120 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||||||||||| | |||||| |||| |
|
|
| T |
5351373 |
agaaactctacttgatgtgtcactaggatgactgttttctctttgagagcactcat |
5351428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 11833826 - 11833763
Alignment:
| Q |
54 |
caacttttgagagaaactccacttgatgtgtcacaagaatgactgttttctctcttagagcagt |
117 |
Q |
| |
|
|||||| ||||||||| ||||||||||| || || ||||||||||||||| |||| | |||||| |
|
|
| T |
11833826 |
caacttctgagagaaagtccacttgatgagtaactagaatgactgttttcgctctcaaagcagt |
11833763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 39505477 - 39505531
Alignment:
| Q |
244 |
cagtgtgcgcgtcaactgcgctgaaagggtcatcgaggagaaagatatcagcatc |
298 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
39505477 |
cagtgtgtgcgtcaactgcactgaaggggtcgtcgaggagatagatatcagcatc |
39505531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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