View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0940_low_30 (Length: 291)
Name: NF0940_low_30
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 7038216 - 7038324
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |
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| T |
7038216 |
ttaatcaccgtatctactgctggaatatctagtcccctgctagctaagtcattacaaagaagaattttgcagttcccagacttgaacgcattcaaggctt |
7038315 |
T |
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| Q |
203 |
caagtctct |
211 |
Q |
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||||||||| |
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| T |
7038316 |
caagtctct |
7038324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 7877186 - 7877292
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
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||||||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
7877186 |
ttaatcaccatatctattgctggaatatctagtcccctactagctacgtcattacaaaggagaattttgcagttcccagacttgaacgcattcaaggctt |
7877285 |
T |
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| Q |
203 |
caagtct |
209 |
Q |
| |
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||||||| |
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| T |
7877286 |
caagtct |
7877292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 7315148 - 7315244
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaagg |
199 |
Q |
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||||||||| |||||||||||||||||||||||||| | ||| | | |||| ||||||||||||| ||||| | |||||||||||| |||||||||| |
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| T |
7315148 |
ttaatcaccatatctactgctggaatatctagtcccttactaacgaagtcactacaaaggagaatattgcactccccagacttcaatgcattcaagg |
7315244 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 1381659 - 1381753
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaa |
197 |
Q |
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| T |
1381659 |
ttaatcaccatatctaccgctggaatatctagtcccttactaaggaagtcactacaaaggagaatattgtactccccagacttgaacgcattcaa |
1381753 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 30649083 - 30648978
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
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|
||||||||| ||||||||||||||||||| |||||||| ||| |||||||| ||||||||||||| ||||| | ||||||||| ||| |||||||||| |
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| T |
30649083 |
ttaatcaccatatctactgctggaatatccagtcccctactagctacgtcagtacaaaggagaatattgcaatccccagacttgaacttattcaaggctc |
30648984 |
T |
|
| Q |
203 |
caagtc |
208 |
Q |
| |
|
|||||| |
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| T |
30648983 |
caagtc |
30648978 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 20519509 - 20519614
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||| ||||| | ||| ||||| ||| |||||||||| |
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| T |
20519509 |
ttaatcaccatatctactgctgggatatccagtcccctgctagctacgtcagtacaaaggagaatattgcaatccccggacttgaacttattcaaggctc |
20519608 |
T |
|
| Q |
203 |
caagtc |
208 |
Q |
| |
|
|||||| |
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|
| T |
20519609 |
caagtc |
20519614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 29378328 - 29378426
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggct |
201 |
Q |
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||||||||| ||||||| |||||||||||||||||||| ||| || | ||| ||||||||||||| ||| | || |||||||| |||||||||| |||| |
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| T |
29378328 |
ttaatcaccatatctaccgctggaatatctagtcccctcctagctgcttcactacaaaggagaatattgaactttccagacttgaacgcattcagggct |
29378426 |
T |
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