View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0940_low_36 (Length: 253)

Name: NF0940_low_36
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0940_low_36
NF0940_low_36
[»] chr4 (2 HSPs)
chr4 (98-253)||(31251960-31252115)
chr4 (99-253)||(25815030-25815183)
[»] chr5 (1 HSPs)
chr5 (98-203)||(23052807-23052912)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 98 - 253
Target Start/End: Complemental strand, 31252115 - 31251960
Alignment:
Q  98 gataattctcatcacaaattccttttgattatatgattaattaacatctaattgattcttatctcatttcattaccatgtataaaatcactccattagat 197  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31252115 gataattctcatcacaaattccttttgattctatgatttattaacatctaattgattcttatctcatttcattaccatgtataaaatcactccattagat 31252016  T
Q  198 gataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagttttgga 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31252015 gataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagttttgga 31251960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 99 - 253
Target Start/End: Original strand, 25815030 - 25815183
Alignment:
Q  99 ataattctcatcacaaattccttttgattatatgattaattaacatctaattgattcttatctcatttcattaccatgtataaaatcactccattagatg 198  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||    
T  25815030 ataattctcatcacaaattccttttgattttatgattaattaacatcta-ttgattcttatctcatttcattaccatgtataaaatgaccccattagatg 25815128  T
Q  199 ataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagttttgga 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25815129 ataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagttttgga 25815183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 23052807 - 23052912
Alignment:
Q  98 gataattctcatcacaaattccttttgattatatgattaattaacatctaattgattcttatctcatttcattaccatgtataaaatcactccattagat 197  Q
    ||||| |||||| |||||||  |||||||| |||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||  ||||||||    
T  23052807 gataaatctcataacaaatttattttgattttatgattaattaacatctaattgattctcatctcattccatcaccatgtataaaatcacctcattagat 23052906  T
Q  198 gataaa 203  Q
    ||||||    
T  23052907 gataaa 23052912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University