View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0940_low_37 (Length: 252)
Name: NF0940_low_37
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 42214888 - 42214720
Alignment:
| Q |
1 |
tgtgatctactgatcaaagagattcctccagcataaaaccatcaccaataaattcagaatcaagtccctcatgtccatcaaattccttgagccccaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214888 |
tgtgatctactgatcaaagagattcctccagcataaaaccatcaccaataaattcagaatcaagtccctcatgtccatcaaattccttgagccccaccaa |
42214789 |
T |
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| Q |
101 |
tgtctcaattgcacactctttgtccaaaacaatgcttgaatcaaaatcatcatcacctttttgttcatc |
169 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214788 |
tgtctcaattgcacactctttgtccaaaacaatgcttgaatcaaaatcatcatcacctttttgttcatc |
42214720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 42208082 - 42207957
Alignment:
| Q |
1 |
tgtgatctactgatcaaagagattcctccagcataaaaccatcaccaataaattcagaatcaagtccctcatgtccatcaaattccttgagccccaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42208082 |
tgtgatctactgatcaaagagattcctccagcataaaaccatcaccaataaattcagaatcaagtccctcatgtccatcaaattccttgagccccaccaa |
42207983 |
T |
|
| Q |
101 |
tgtctcaattgcacactctttgtcca |
126 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42207982 |
tgtctcaattgcacactctttgtcca |
42207957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 42207927 - 42207893
Alignment:
| Q |
135 |
cttgaatcaaaatcatcatcacctttttgttcatc |
169 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
42207927 |
cttgaatcaaaatcctcatcacctttttgttcatc |
42207893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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