View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0940_low_5 (Length: 573)
Name: NF0940_low_5
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 137 - 461
Target Start/End: Complemental strand, 25145606 - 25145278
Alignment:
| Q |
137 |
aaaaatttcaaatttgtcaacaaagtattaaatttgtttgtgaaaatttactaaaataaattggataattcacactttgtaaaacattataaaatacctc |
236 |
Q |
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| T |
25145606 |
aaaaatttcaaatttgtcaacaaagtattaaatttgtttgtgtaaatttactaaaataaattggataattcacactttgtcaaacattataaaatacctc |
25145507 |
T |
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| Q |
237 |
aactttatcactcatgcggttttgcacctctgcctgcatttgaaggacttcctttagctgaagagcactattcatttgcaaaatataattg----tataa |
332 |
Q |
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| T |
25145506 |
aactttatcactcatgcggttttgcacctctgcctgcatttgaaggacttcctttagctgaagagcactattcatttgcaaaatataattaattatataa |
25145407 |
T |
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| Q |
333 |
gctgtctcaaaatgagatatgaaaattattgtttaattagttttttgacttacgatatagaacagaaatttggcagtatatctgatatgcttctcttctc |
432 |
Q |
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| T |
25145406 |
gttgtctcaaaatgagatatgaaaattattgtttaattagttttttgacttacgatatagaacagaaatttggcagtatatctgatatgcttctcttctc |
25145307 |
T |
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| Q |
433 |
aatttttcctccttcataaatgattaagt |
461 |
Q |
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| T |
25145306 |
aatttttcctccttcgtaaatgattaagt |
25145278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 25145729 - 25145650
Alignment:
| Q |
69 |
agcagagaaatttggatgaagcacaaagtgtaatatgtcatatatttacttgagaaaaaagtaagattaaaaatttcaaa |
148 |
Q |
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| T |
25145729 |
agcagacaaatttggatgaagcacaaagtgtaatatgtcatatatttacttgagaaaaaagtaagattaaaaatttcaaa |
25145650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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