View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0940_low_7 (Length: 488)
Name: NF0940_low_7
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 29 - 412
Target Start/End: Original strand, 29443234 - 29443617
Alignment:
| Q |
29 |
acctttttgttgcgaagccgtctttttattataggaattcctttgctcacatcatccaatttgatattttcatctagcaaatgaagcaaaagggtctctt |
128 |
Q |
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| T |
29443234 |
acctttttgttgcgaagccgtctttttattataggaattcctttgctcacatcatccaatttgatattttcaaatagcaaatgaagcaaaagggtctctt |
29443333 |
T |
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| Q |
129 |
gcaagtgtacgagaccatgtttcattgaattttctcttacatcaacaagaaaacttgaactatcaaattttctagacattgagttatatactgctctagc |
228 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29443334 |
gcaagtgtactagaccatgtttcattgaattctctcttacatcaacaacaaaacttgaactatcaaattttctagacattgagttatatactgctctagc |
29443433 |
T |
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| Q |
229 |
tagtgttgttttaccaatgccaccaattccacaaattccaaccatgcaaacatcaacatcatcatcatcattagacttgttttctagaagtgacattatt |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29443434 |
cagtgttgttttaccaatgccaccaattccacaaattccaaccatgcaaacatcaacatcatcatcatcattagacttgttttctagaagtgacattatt |
29443533 |
T |
|
| Q |
329 |
tgtgaaattttgtaattcaatccaactggatgatcagctatgtgtaaaggggtaagatttaatttcctagacatttcttctgtg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29443534 |
tgtgaaattttgtaattcaatccaactggatgatcagctatgtgtaaaggggtaagatttaatttcctagacatttcttctgtg |
29443617 |
T |
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