View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0940_low_8 (Length: 478)
Name: NF0940_low_8
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_low_8 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 35 - 474
Target Start/End: Complemental strand, 14749022 - 14748589
Alignment:
| Q |
35 |
aagaaatttgattgatcttttgagcgttataaagttcgagtagtaggtggtcgtgacggtcaacaaactggtatagattatggtgaaactattagtccga |
134 |
Q |
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| T |
14749022 |
aagaaatttgattgatcttttgagtgttataaagctcgagtagtaggtggtggtgccggtcaacaaactggtatagattatagtgaaactattagtccga |
14748923 |
T |
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| Q |
135 |
tagtcaaactagctatactatctaaatcatagtgttttcatcaactagatgtcaaaaacgcttctttgcatgagaatcttgatgaaactatgtgcatgca |
234 |
Q |
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| T |
14748922 |
tagtcaaactagctgtactatctaaatcatagtgttttcatcaactagatgtaaaaaattcttctttgcatgagaatcttgatgaaactatgtgcatgca |
14748823 |
T |
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| Q |
235 |
ccagcatcctagtttttgcaatcccaatacgttgattacatatgatttttaaagaagtcactctttgtactcaaacaagcaccgtgcttaattagtacca |
334 |
Q |
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| T |
14748822 |
ccagcatcctagtttttgcaat-ccaatactttgattacatatgatttttaaagaagtcactctttgtactcaaacaagcaccgtgc----ttagtacca |
14748728 |
T |
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| Q |
335 |
gtgttttatttattttgtctctacattagatttcactcataggggctgaaatcattatttacttatcaccgcaatggataacacatcttacaatcttctc |
434 |
Q |
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| T |
14748727 |
gtgttttatttattttatctctacattagatttcactcataggggctgaaatcattatttacttatcaccgcaat-gataacacatcttacaatcttctc |
14748629 |
T |
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| Q |
435 |
tatgtgggtgaaattattcttgtcttgtcctatgatactc |
474 |
Q |
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| T |
14748628 |
taagtgggtgaaattattcttgtcttgtcttctgatactc |
14748589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 47250579 - 47250486
Alignment:
| Q |
153 |
tatctaaatcatagtgttttcatcaactagatgtcaaaaacgcttctttgcatgagaatcttgatgaaactatgtgcatgcaccagcatcctag |
246 |
Q |
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| T |
47250579 |
tatccaaatcatggtgtctccatcaactagatgtcaaaaatgcttttttgcatggaaatattgacgaaactgtgtatatgcaccagcttcctag |
47250486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 90896 - 90987
Alignment:
| Q |
153 |
tatctaaatcatagtgttttcatcaactagatgtcaaaaacgcttctttgcatgagaatcttgatgaaactatgtgcatgcaccagcatcct |
244 |
Q |
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| T |
90896 |
tatccaaatcatggtgtctccatcaactagatgtcaaaaatgcttttttgcatggaaatcttgacgaaaccgtgtatatgcaccagcctcct |
90987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 10534494 - 10534403
Alignment:
| Q |
153 |
tatctaaatcatagtgttttcatcaactagatgtcaaaaacgcttctttgcatgagaatcttgatgaaactatgtgcatgcaccagcatcct |
244 |
Q |
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| T |
10534494 |
tatccaaatcatggtgtctccatcaactagatgtcaaaaatgtttttttgcatggaaatcttgacgaaactgtgtatatgcaccagcctcct |
10534403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 25624930 - 25624839
Alignment:
| Q |
153 |
tatctaaatcatagtgttttcatcaactagatgtcaaaaacgcttctttgcatgagaatcttgatgaaactatgtgcatgcaccagcatcct |
244 |
Q |
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| T |
25624930 |
tatccaaatcatggtgtctccatcaactagatgtcaaaaatgcttttttgcatggaaatcttgacgaaaccgtgtatatgcaccagcctcct |
25624839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 50690415 - 50690469
Alignment:
| Q |
166 |
gtgttttcatcaactagatgtcaaaaacgcttctttgcatgagaatcttgatgaa |
220 |
Q |
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| T |
50690415 |
gtgtcttcatcaactagatgtcaagaacgctttcttgcatggaaatcttgatgaa |
50690469 |
T |
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