View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0941_high_1 (Length: 1076)

Name: NF0941_high_1
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0941_high_1
NF0941_high_1
[»] chr4 (44 HSPs)
chr4 (164-550)||(46015607-46015993)
chr4 (691-1076)||(46015608-46015993)
chr4 (691-850)||(46428196-46428355)
chr4 (164-323)||(46428196-46428355)
chr4 (694-850)||(46027879-46028034)
chr4 (167-323)||(46027879-46028034)
chr4 (896-1054)||(46027579-46027737)
chr4 (369-527)||(46027579-46027737)
chr4 (367-556)||(46427913-46428095)
chr4 (894-1049)||(46427946-46428095)
chr4 (485-563)||(46428507-46428584)
chr4 (635-690)||(46016023-46016078)
chr4 (108-163)||(46016023-46016078)
chr4 (446-563)||(46021029-46021144)
chr4 (632-686)||(46428384-46428438)
chr4 (105-159)||(46428384-46428438)
chr4 (173-323)||(46303817-46303969)
chr4 (700-850)||(46303817-46303969)
chr4 (700-842)||(46021197-46021341)
chr4 (173-315)||(46021197-46021341)
chr4 (691-787)||(46015351-46015446)
chr4 (164-260)||(46015351-46015446)
chr4 (691-787)||(46020583-46020678)
chr4 (164-260)||(46020583-46020678)
chr4 (973-1076)||(46021043-46021144)
chr4 (1012-1076)||(46428521-46428584)
chr4 (716-790)||(46020784-46020861)
chr4 (189-263)||(46020784-46020861)
chr4 (635-690)||(46020921-46020976)
chr4 (108-163)||(46020921-46020976)
chr4 (424-552)||(46304004-46304130)
chr4 (951-1074)||(46304004-46304125)
chr4 (1-36)||(46428507-46428542)
chr4 (494-556)||(46028196-46028258)
chr4 (1021-1074)||(46028205-46028258)
chr4 (164-260)||(46246255-46246350)
chr4 (691-787)||(46246255-46246350)
chr4 (495-556)||(24803076-24803137)
chr4 (708-757)||(41074446-41074495)
chr4 (181-230)||(41074446-41074495)
chr4 (499-556)||(41075096-41075153)
chr4 (3-36)||(46021029-46021062)
chr4 (631-688)||(46028078-46028135)
chr4 (104-161)||(46028078-46028135)
[»] chr8 (9 HSPs)
chr8 (492-553)||(4525565-4525626)
chr8 (164-241)||(4522939-4523015)
chr8 (691-768)||(4522939-4523015)
chr8 (1019-1076)||(4525565-4525622)
chr8 (489-556)||(4522770-4522837)
chr8 (1016-1076)||(4522770-4522830)
chr8 (504-556)||(5555329-5555381)
chr8 (173-258)||(4525320-4525403)
chr8 (700-785)||(4525320-4525403)
[»] chr1 (26 HSPs)
chr1 (202-310)||(3804121-3804229)
chr1 (729-837)||(3804121-3804229)
chr1 (178-295)||(3801740-3801859)
chr1 (705-822)||(3801740-3801859)
chr1 (480-556)||(50667472-50667548)
chr1 (479-555)||(3801975-3802050)
chr1 (1007-1072)||(50667483-50667548)
chr1 (1006-1062)||(3801975-3802031)
chr1 (164-280)||(3802212-3802327)
chr1 (691-807)||(3802212-3802327)
chr1 (635-688)||(50668628-50668681)
chr1 (108-161)||(50668628-50668681)
chr1 (492-556)||(3802432-3802496)
chr1 (713-776)||(50668040-50668103)
chr1 (186-249)||(50668040-50668103)
chr1 (164-284)||(3802651-3802767)
chr1 (691-811)||(3802651-3802767)
chr1 (446-556)||(3803692-3803802)
chr1 (504-558)||(20949977-20950031)
chr1 (504-558)||(20950948-20951002)
chr1 (486-556)||(50669581-50669651)
chr1 (489-549)||(25481831-25481889)
chr1 (1016-1076)||(25481831-25481889)
chr1 (1016-1076)||(25862146-25862204)
chr1 (489-549)||(25862146-25862204)
chr1 (1013-1062)||(50669602-50669651)
[»] scaffold0079 (2 HSPs)
scaffold0079 (164-243)||(7948-8026)
scaffold0079 (691-770)||(7948-8026)
[»] scaffold0384 (2 HSPs)
scaffold0384 (164-241)||(5736-5812)
scaffold0384 (691-768)||(5736-5812)
[»] chr3 (2 HSPs)
chr3 (167-269)||(52806365-52806467)
chr3 (694-796)||(52806365-52806467)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 164 - 550
Target Start/End: Complemental strand, 46015993 - 46015607
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46015993 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 46015894  T
Q  264 attaatataactgcaaagaacatatcaatacaccattacagcattgagtaaaacttacttgctcnnnnnnnattattagcaataaactgtttctctcgct 363  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||||||| |||||||||||||||||    
T  46015893 attaatataactgcaaagaacatatcaatacatcattacagcattgagtaaaacttacttgctctttttttattattagcaagaaactgtttctctcgct 46015794  T
Q  364 ctgtggcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaaatttctccttgtgcgtcttaccttttgtttcttagcaacttcattttt 463  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||||||||||||||    
T  46015793 ctgcggcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaactttctccctatgcgtcttactttttgtttcttagcaacttcattttt 46015694  T
Q  464 gtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatgg 550  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46015693 gtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatgg 46015607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 691 - 1076
Target Start/End: Complemental strand, 46015993 - 46015608
Alignment:
Q  691 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 790  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46015993 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 46015894  T
Q  791 attaatataactgcaaagaacatatcaatacaccattacagcattgagtaaaacttacttgctcnnnnnnnattattagcaataaactgtttctctcgct 890  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||||||| |||||||||||||||||    
T  46015893 attaatataactgcaaagaacatatcaatacatcattacagcattgagtaaaacttacttgctctttttttattattagcaagaaactgtttctctcgct 46015794  T
Q  891 ctgtggcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaaatttctccttgtgcgtcttaccttttgtttcttagcaacttcattttt 990  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||||||||||||||    
T  46015793 ctgcggcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaactttctccctatgcgtcttactttttgtttcttagcaacttcattttt 46015694  T
Q  991 gtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 1076  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46015693 gtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 46015608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 691 - 850
Target Start/End: Complemental strand, 46428355 - 46428196
Alignment:
Q  691 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 790  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  46428355 attttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaa 46428256  T
Q  791 attaatataactgcaaagaacatatcaatacaccattacagcattgagtaaaacttactt 850  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46428255 attaatttaactgcaaagaacatatcaatataccattacagcattgagtaaaacttactt 46428196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 164 - 323
Target Start/End: Complemental strand, 46428355 - 46428196
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 263  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  46428355 attttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaa 46428256  T
Q  264 attaatataactgcaaagaacatatcaatacaccattacagcattgagtaaaacttactt 323  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46428255 attaatttaactgcaaagaacatatcaatataccattacagcattgagtaaaacttactt 46428196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 694 - 850
Target Start/End: Complemental strand, 46028034 - 46027879
Alignment:
Q  694 ttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaatt 793  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||    
T  46028034 ttcataaaaacaggaaagcaaaaataattgtatcttcacatagttt-aaagtcaaaatttaaatcataacagatggacgaagtacatgttaacctaaatt 46027936  T
Q  794 aatataactgcaaagaacatatcaatacaccattacagcattgagtaaaacttactt 850  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46027935 aatttaactgcaaagaacatatcaatacaccattacagcattgagtaaaacttactt 46027879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 167 - 323
Target Start/End: Complemental strand, 46028034 - 46027879
Alignment:
Q  167 ttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaatt 266  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||    
T  46028034 ttcataaaaacaggaaagcaaaaataattgtatcttcacatagttt-aaagtcaaaatttaaatcataacagatggacgaagtacatgttaacctaaatt 46027936  T
Q  267 aatataactgcaaagaacatatcaatacaccattacagcattgagtaaaacttactt 323  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46027935 aatttaactgcaaagaacatatcaatacaccattacagcattgagtaaaacttactt 46027879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 896 - 1054
Target Start/End: Complemental strand, 46027737 - 46027579
Alignment:
Q  896 gcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaaatttctccttgtgcgtcttaccttttgtttcttagcaacttcatttttgtttg 995  Q
    |||||||||||||||||||||||||||||||||| | ||| |||||| |||||| |||||| |||||| ||||| ||| |||||||||||||||||||||    
T  46027737 gcaacttcgttcttgtttcttgcacgacgaacatacaccacacgaaactttctctttgtgcttcttactttttgcttcatagcaacttcatttttgtttg 46027638  T
Q  996 tatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaa 1054  Q
    || |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  46027637 taattaaacaacgctcctcagcaaattctgtttaatgttttgatcaaataaaatatgaa 46027579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 369 - 527
Target Start/End: Complemental strand, 46027737 - 46027579
Alignment:
Q  369 gcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaaatttctccttgtgcgtcttaccttttgtttcttagcaacttcatttttgtttg 468  Q
    |||||||||||||||||||||||||||||||||| | ||| |||||| |||||| |||||| |||||| ||||| ||| |||||||||||||||||||||    
T  46027737 gcaacttcgttcttgtttcttgcacgacgaacatacaccacacgaaactttctctttgtgcttcttactttttgcttcatagcaacttcatttttgtttg 46027638  T
Q  469 tatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaa 527  Q
    || |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  46027637 taattaaacaacgctcctcagcaaattctgtttaatgttttgatcaaataaaatatgaa 46027579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 367 - 556
Target Start/End: Complemental strand, 46428095 - 46427913
Alignment:
Q  367 tggcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaaatttctccttgtgcgtcttaccttttgtttcttagcaacttcatttttgtt 466  Q
    ||||||||||||||||||||||||||||||||||||       |||||| |||||| |||||| |||||| || ||  |||||||||||||| ||||| |    
T  46428095 tggcaacttcgttcttgtttcttgcacgacgaacatc------acgaaactttctctttgtgcttcttactttctgcctcttagcaacttcacttttgct 46428002  T
Q  467 tgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggctgaaa 556  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||  ||| || ||||||| |||| |||||    
T  46428001 tgtatttaaacaatgctctttagcaaattctgtttaatgttttgatcaaata-aaaatgaaagattgatgtaattttaacatggttgaaa 46427913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 894 - 1049
Target Start/End: Complemental strand, 46428095 - 46427946
Alignment:
Q  894 tggcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaaatttctccttgtgcgtcttaccttttgtttcttagcaacttcatttttgtt 993  Q
    ||||||||||||||||||||||||||||||||||||       |||||| |||||| |||||| |||||| || ||  |||||||||||||| ||||| |    
T  46428095 tggcaacttcgttcttgtttcttgcacgacgaacatc------acgaaactttctctttgtgcttcttactttctgcctcttagcaacttcacttttgct 46428002  T
Q  994 tgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaa 1049  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46428001 tgtatttaaacaatgctctttagcaaattctgtttaatgttttgatcaaataaaaa 46427946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 485 - 563
Target Start/End: Complemental strand, 46428584 - 46428507
Alignment:
Q  485 cttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggctgaaactgttaa 563  Q
    |||| |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||    
T  46428584 cttaccaaattctgtttaatgttttgatcaattaagaaatgaa-gggtgaggttattttaatatggctgaaactgttaa 46428507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 635 - 690
Target Start/End: Complemental strand, 46016078 - 46016023
Alignment:
Q  635 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacatatg 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46016078 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacatatg 46016023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 46016078 - 46016023
Alignment:
Q  108 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacatatg 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46016078 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacatatg 46016023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 446 - 563
Target Start/End: Complemental strand, 46021144 - 46021029
Alignment:
Q  446 cttagcaacttcatttttgtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaa 545  Q
    |||| ||||||||||||||||  | ||| ||| | ||| |||| |||||||||||||||||||| || |||||| |||||||  ||||||||||||||||    
T  46021144 cttaccaacttcatttttgttgttttttgaactacgcttcttaccaaattctgtttaatgtttttatgaaataagaaatgaa--ggtgaggttattttaa 46021047  T
Q  546 tatggctgaaactgttaa 563  Q
    ||||||||||| ||||||    
T  46021046 tatggctgaaagtgttaa 46021029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 632 - 686
Target Start/End: Complemental strand, 46428438 - 46428384
Alignment:
Q  632 aatagaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaaca 686  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428438 aatagaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaaca 46428384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 46428438 - 46428384
Alignment:
Q  105 aatagaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaaca 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428438 aatagaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaaca 46428384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 173 - 323
Target Start/End: Original strand, 46303817 - 46303969
Alignment:
Q  173 aaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaa-cccaaattaatat 271  Q
    |||| ||||||||| ||| |||||| | ||||||||||||||||||||| || |||||||||||||||||| ||| | |||||||| |||||  |||| |    
T  46303817 aaaataggaaagcataaagaattgtgtcttcacatagttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgttaaccccaagctaattt 46303916  T
Q  272 aactgcaaagaacatatcaatacaccattacagcattg-agtaaaacttactt 323  Q
     || ||||||||||| | |||||  ||| ||| ||||| ||||||||||||||    
T  46303917 cacagcaaagaacatgttaatacgacatcacaacattgaagtaaaacttactt 46303969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 700 - 850
Target Start/End: Original strand, 46303817 - 46303969
Alignment:
Q  700 aaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaa-cccaaattaatat 798  Q
    |||| ||||||||| ||| |||||| | ||||||||||||||||||||| || |||||||||||||||||| ||| | |||||||| |||||  |||| |    
T  46303817 aaaataggaaagcataaagaattgtgtcttcacatagttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgttaaccccaagctaattt 46303916  T
Q  799 aactgcaaagaacatatcaatacaccattacagcattg-agtaaaacttactt 850  Q
     || ||||||||||| | |||||  ||| ||| ||||| ||||||||||||||    
T  46303917 cacagcaaagaacatgttaatacgacatcacaacattgaagtaaaacttactt 46303969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 700 - 842
Target Start/End: Complemental strand, 46021341 - 46021197
Alignment:
Q  700 aaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaattaatata 799  Q
    |||||||||||||| ||| |||||| | |||| ||  ||||||||||||  | |||||||||||||||||| | ||| ||||||||| ||||||||| ||    
T  46021341 aaaacaggaaagcagaaagaattgtgtcttcaaatgattttaaagtcaa--tctaaatcataacagatggatggagtgcatgttaactcaaattaattta 46021244  T
Q  800 actgcaaagaacat----atcaatacaccattacagcattgagtaaa 842  Q
    |||||||| || ||    || |||||| |||||||||||||||||||    
T  46021243 actgcaaataatatattaattaatacaacattacagcattgagtaaa 46021197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 173 - 315
Target Start/End: Complemental strand, 46021341 - 46021197
Alignment:
Q  173 aaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaattaatata 272  Q
    |||||||||||||| ||| |||||| | |||| ||  ||||||||||||  | |||||||||||||||||| | ||| ||||||||| ||||||||| ||    
T  46021341 aaaacaggaaagcagaaagaattgtgtcttcaaatgattttaaagtcaa--tctaaatcataacagatggatggagtgcatgttaactcaaattaattta 46021244  T
Q  273 actgcaaagaacat----atcaatacaccattacagcattgagtaaa 315  Q
    |||||||| || ||    || |||||| |||||||||||||||||||    
T  46021243 actgcaaataatatattaattaatacaacattacagcattgagtaaa 46021197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 691 - 787
Target Start/End: Complemental strand, 46015446 - 46015351
Alignment:
Q  691 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacc 787  Q
    |||||||||||| ||||||| ||| || |||| ||| ||||||| |||||||| |||| ||||| ||||||||||||||| ||||| ||||||||||    
T  46015446 attttcataaaa-caggaaaacaacaagaattttatcttcacatggttttaaactcaaaatgtacatcataacagatggatgaagtgcatgttaacc 46015351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 46015446 - 46015351
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacc 260  Q
    |||||||||||| ||||||| ||| || |||| ||| ||||||| |||||||| |||| ||||| ||||||||||||||| ||||| ||||||||||    
T  46015446 attttcataaaa-caggaaaacaacaagaattttatcttcacatggttttaaactcaaaatgtacatcataacagatggatgaagtgcatgttaacc 46015351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 691 - 787
Target Start/End: Complemental strand, 46020678 - 46020583
Alignment:
Q  691 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacc 787  Q
    ||||||||||||| |||||| |||||| |||||||| ||||||| |||||||| |||  | |||||||||||||||||||  |||| ||||||||||    
T  46020678 attttcataaaaa-aggaaaacaaaaagaattgtatcttcacatggttttaaactcataaggtaaatcataacagatggattaagtgcatgttaacc 46020583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 46020678 - 46020583
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacc 260  Q
    ||||||||||||| |||||| |||||| |||||||| ||||||| |||||||| |||  | |||||||||||||||||||  |||| ||||||||||    
T  46020678 attttcataaaaa-aggaaaacaaaaagaattgtatcttcacatggttttaaactcataaggtaaatcataacagatggattaagtgcatgttaacc 46020583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 973 - 1076
Target Start/End: Complemental strand, 46021144 - 46021043
Alignment:
Q  973 cttagcaacttcatttttgtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaa 1072  Q
    |||| ||||||||||||||||  | ||| ||| | ||| |||| |||||||||||||||||||| || |||||| |||||||  ||||||||||||||||    
T  46021144 cttaccaacttcatttttgttgttttttgaactacgcttcttaccaaattctgtttaatgtttttatgaaataagaaatgaa--ggtgaggttattttaa 46021047  T
Q  1073 tatg 1076  Q
    ||||    
T  46021046 tatg 46021043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1012 - 1076
Target Start/End: Complemental strand, 46428584 - 46428521
Alignment:
Q  1012 cttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 1076  Q
    |||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||    
T  46428584 cttaccaaattctgtttaatgttttgatcaattaagaaatg-aagggtgaggttattttaatatg 46428521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 716 - 790
Target Start/End: Complemental strand, 46020861 - 46020784
Alignment:
Q  716 aataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatgg---acgaagtacatgttaacccaa 790  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||   | | |||||||||||||||||    
T  46020861 aataattgtatcttcacatagttttaaagtcaaaacgtaaatcataacagatggatcaagtagtacatgttaacccaa 46020784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 46020861 - 46020784
Alignment:
Q  189 aataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatgg---acgaagtacatgttaacccaa 263  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||   | | |||||||||||||||||    
T  46020861 aataattgtatcttcacatagttttaaagtcaaaacgtaaatcataacagatggatcaagtagtacatgttaacccaa 46020784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 635 - 690
Target Start/End: Complemental strand, 46020976 - 46020921
Alignment:
Q  635 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacatatg 690  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||    
T  46020976 agaatgaaatgggctgaatttcccaagtctggcaacaacggcaagatagacatatg 46020921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 46020976 - 46020921
Alignment:
Q  108 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacatatg 163  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||    
T  46020976 agaatgaaatgggctgaatttcccaagtctggcaacaacggcaagatagacatatg 46020921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 424 - 552
Target Start/End: Original strand, 46304004 - 46304130
Alignment:
Q  424 ttgtgcgtcttaccttttgtttcttagcaacttcatttttgtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaa 523  Q
    ||||||| | ||| ||||| |||| ||||||||||||||||||  | ||| |   | |||||||||||||||||| || ||||||||||||| ||| |||    
T  46304004 ttgtgcgccctactttttgcttctcagcaacttcatttttgttgttttttgagtgacgctccttagcaaattctgatttatgttttgatcaattaagaaa 46304103  T
Q  524 tgaaagggtgaggttattttaatatggct 552  Q
       ||||||||| ||||||||||| ||||    
T  46304104 --caagggtgagattattttaatacggct 46304130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 951 - 1074
Target Start/End: Original strand, 46304004 - 46304125
Alignment:
Q  951 ttgtgcgtcttaccttttgtttcttagcaacttcatttttgtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaa 1050  Q
    ||||||| | ||| ||||| |||| ||||||||||||||||||  | ||| |   | |||||||||||||||||| || ||||||||||||| ||| |||    
T  46304004 ttgtgcgccctactttttgcttctcagcaacttcatttttgttgttttttgagtgacgctccttagcaaattctgatttatgttttgatcaattaagaaa 46304103  T
Q  1051 tgaaagggtgaggttattttaata 1074  Q
       ||||||||| |||||||||||    
T  46304104 --caagggtgagattattttaata 46304125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 46428542 - 46428507
Alignment:
Q  1 agggtgaggttattttaatatggctgaaactgttaa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  46428542 agggtgaggttattttaatatggctgaaactgttaa 46428507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 494 - 556
Target Start/End: Complemental strand, 46028258 - 46028196
Alignment:
Q  494 ttctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggctgaaa 556  Q
    ||||||| |||||||||||||||||| ||| ||||||||||| |||| |||||| ||| ||||    
T  46028258 ttctgttaaatgttttgatcaaataagaaacgaaagggtgagattatattaatacggcagaaa 46028196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1021 - 1074
Target Start/End: Complemental strand, 46028258 - 46028205
Alignment:
Q  1021 ttctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaata 1074  Q
    ||||||| |||||||||||||||||| ||| ||||||||||| |||| ||||||    
T  46028258 ttctgttaaatgttttgatcaaataagaaacgaaagggtgagattatattaata 46028205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 260
Target Start/End: Original strand, 46246255 - 46246350
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacc 260  Q
    ||||||||||||| ||||||  ||||| |||||||| ||||||  |||||||| | |  | |||||||||||||||||||  |||| ||||||||||    
T  46246255 attttcataaaaa-aggaaaaaaaaaagaattgtatcttcacaaggttttaaacttataaggtaaatcataacagatggattaagtgcatgttaacc 46246350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 691 - 787
Target Start/End: Original strand, 46246255 - 46246350
Alignment:
Q  691 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacc 787  Q
    ||||||||||||| ||||||  ||||| |||||||| ||||||  |||||||| | |  | |||||||||||||||||||  |||| ||||||||||    
T  46246255 attttcataaaaa-aggaaaaaaaaaagaattgtatcttcacaaggttttaaacttataaggtaaatcataacagatggattaagtgcatgttaacc 46246350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 495 - 556
Target Start/End: Original strand, 24803076 - 24803137
Alignment:
Q  495 tctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggctgaaa 556  Q
    ||||||| |||||||||||||||||||||  ||||| |||  ||||||| |||||| |||||    
T  24803076 tctgttttatgttttgatcaaataaaaaacaaaaggatgaacttattttgatatggttgaaa 24803137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 708 - 757
Target Start/End: Complemental strand, 41074495 - 41074446
Alignment:
Q  708 aaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaat 757  Q
    |||||||||| |||||||| ||||||| ||||||||||||| || |||||    
T  41074495 aaagcaaaaagaattgtatcttcacatggttttaaagtcaaaatctaaat 41074446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 41074495 - 41074446
Alignment:
Q  181 aaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaat 230  Q
    |||||||||| |||||||| ||||||| ||||||||||||| || |||||    
T  41074495 aaagcaaaaagaattgtatcttcacatggttttaaagtcaaaatctaaat 41074446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 499 - 556
Target Start/End: Complemental strand, 41075153 - 41075096
Alignment:
Q  499 tttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggctgaaa 556  Q
    ||||||||||||||||||||| |||   || ||||||| ||||| |||||||||||||    
T  41075153 tttaatgttttgatcaaataagaaacccaaaggtgaggatatttcaatatggctgaaa 41075096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 46021062 - 46021029
Alignment:
Q  3 ggtgaggttattttaatatggctgaaactgttaa 36  Q
    ||||||||||||||||||||||||||| ||||||    
T  46021062 ggtgaggttattttaatatggctgaaagtgttaa 46021029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 631 - 688
Target Start/End: Complemental strand, 46028135 - 46028078
Alignment:
Q  631 taatagaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacata 688  Q
    ||||||||||||||||||| |||||| ||||  ||||||| || |||| |||||||||    
T  46028135 taatagaatgaaatgggctaaatttcacaagtatggcaaccatagcaaaataaacata 46028078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 46028135 - 46028078
Alignment:
Q  104 taatagaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacata 161  Q
    ||||||||||||||||||| |||||| ||||  ||||||| || |||| |||||||||    
T  46028135 taatagaatgaaatgggctaaatttcacaagtatggcaaccatagcaaaataaacata 46028078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 492 - 553
Target Start/End: Original strand, 4525565 - 4525626
Alignment:
Q  492 aattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggctg 553  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||    
T  4525565 aattctgtttaatgtttttatcaaataagaaatgaaagggtgaggttgttttaatatggctg 4525626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 4522939 - 4523015
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatg 241  Q
    |||||||||||| |||||||||||||| |||||| | ||||||| ||||||||||||| || ||||||||||||||||    
T  4522939 attttcataaaa-caggaaagcaaaaagaattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatg 4523015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 691 - 768
Target Start/End: Original strand, 4522939 - 4523015
Alignment:
Q  691 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatg 768  Q
    |||||||||||| |||||||||||||| |||||| | ||||||| ||||||||||||| || ||||||||||||||||    
T  4522939 attttcataaaa-caggaaagcaaaaagaattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatg 4523015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1019 - 1076
Target Start/End: Original strand, 4525565 - 4525622
Alignment:
Q  1019 aattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 1076  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  4525565 aattctgtttaatgtttttatcaaataagaaatgaaagggtgaggttgttttaatatg 4525622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 4522770 - 4522837
Alignment:
Q  489 gcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggctgaaa 556  Q
    |||||||||||||||| |||||||||||||| |||  |||||||||| | |||||||||||| |||||    
T  4522770 gcaaattctgtttaatattttgatcaaataagaaacaaaagggtgagatcattttaatatggatgaaa 4522837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1016 - 1076
Target Start/End: Original strand, 4522770 - 4522830
Alignment:
Q  1016 gcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 1076  Q
    |||||||||||||||| |||||||||||||| |||  |||||||||| | |||||||||||    
T  4522770 gcaaattctgtttaatattttgatcaaataagaaacaaaagggtgagatcattttaatatg 4522830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 504 - 556
Target Start/End: Complemental strand, 5555381 - 5555329
Alignment:
Q  504 tgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggctgaaa 556  Q
    |||||||||||||||| |||  ||| |||||||||| ||||||||||||||||    
T  5555381 tgttttgatcaaataagaaagcaaatggtgaggttactttaatatggctgaaa 5555329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 4525320 - 4525403
Alignment:
Q  173 aaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaa 258  Q
    |||||| ||||||||||| |||||| |  |||||| ||||||||||||| |  || ||||||||||||||| ||||| ||| ||||    
T  4525320 aaaacaagaaagcaaaaagaattgtct--tcacatggttttaaagtcaaaacctagatcataacagatggatgaagtgcattttaa 4525403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 700 - 785
Target Start/End: Original strand, 4525320 - 4525403
Alignment:
Q  700 aaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaa 785  Q
    |||||| ||||||||||| |||||| |  |||||| ||||||||||||| |  || ||||||||||||||| ||||| ||| ||||    
T  4525320 aaaacaagaaagcaaaaagaattgtct--tcacatggttttaaagtcaaaacctagatcataacagatggatgaagtgcattttaa 4525403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 202 - 310
Target Start/End: Original strand, 3804121 - 3804229
Alignment:
Q  202 tcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaattaatataactgcaaagaacatatcaatacaccatta 301  Q
    |||||| ||||||||||||| || |||||||||||||||||| ||||| |||||||||||||| |||  | |  ||||||||||||| |||||| ||| |    
T  3804121 tcacatggttttaaagtcaaaatttaaatcataacagatggatgaagtgcatgttaacccaaactaacttcatagcaaagaacatattaatacaacatca 3804220  T
Q  302 cagcattga 310  Q
    || ||||||    
T  3804221 caacattga 3804229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 729 - 837
Target Start/End: Original strand, 3804121 - 3804229
Alignment:
Q  729 tcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaattaatataactgcaaagaacatatcaatacaccatta 828  Q
    |||||| ||||||||||||| || |||||||||||||||||| ||||| |||||||||||||| |||  | |  ||||||||||||| |||||| ||| |    
T  3804121 tcacatggttttaaagtcaaaatttaaatcataacagatggatgaagtgcatgttaacccaaactaacttcatagcaaagaacatattaatacaacatca 3804220  T
Q  829 cagcattga 837  Q
    || ||||||    
T  3804221 caacattga 3804229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 3801740 - 3801859
Alignment:
Q  178 aggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgtt--aacccaaattaatataact 275  Q
    ||||||||| ||| |||||| | ||||||| ||||||||||||| || |||||||||||||||||| ||| | ||||||  | |||||| |||| | |||    
T  3801740 aggaaagcataaagaattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgtttaaccccaaactaatttcact 3801839  T
Q  276 gcaaagaacatatcaataca 295  Q
    ||||||||| ||| ||||||    
T  3801840 gcaaagaacgtattaataca 3801859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 705 - 822
Target Start/End: Original strand, 3801740 - 3801859
Alignment:
Q  705 aggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgtt--aacccaaattaatataact 802  Q
    ||||||||| ||| |||||| | ||||||| ||||||||||||| || |||||||||||||||||| ||| | ||||||  | |||||| |||| | |||    
T  3801740 aggaaagcataaagaattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgtttaaccccaaactaatttcact 3801839  T
Q  803 gcaaagaacatatcaataca 822  Q
    ||||||||| ||| ||||||    
T  3801840 gcaaagaacgtattaataca 3801859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 480 - 556
Target Start/End: Complemental strand, 50667548 - 50667472
Alignment:
Q  480 tgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggctgaaa 556  Q
    ||||||||||||| |||  |||| |||||||||||||||| |||| ||||||||||| |||||||| ||||||||||    
T  50667548 tgctccttagcaacttcgatttattgttttgatcaaataagaaatcaaagggtgaggatattttaacatggctgaaa 50667472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 479 - 555
Target Start/End: Original strand, 3801975 - 3802050
Alignment:
Q  479 atgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggctgaa 555  Q
    |||||| ||||||||||||| |||||||||||||||||||| |||  |||||||||| || |||||||| |||||||    
T  3801975 atgctctttagcaaattctgattaatgttttgatcaaataagaaacaaaagggtgagatt-ttttaatacggctgaa 3802050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1007 - 1072
Target Start/End: Complemental strand, 50667548 - 50667483
Alignment:
Q  1007 tgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaa 1072  Q
    ||||||||||||| |||  |||| |||||||||||||||| |||| ||||||||||| ||||||||    
T  50667548 tgctccttagcaacttcgatttattgttttgatcaaataagaaatcaaagggtgaggatattttaa 50667483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1006 - 1062
Target Start/End: Original strand, 3801975 - 3802031
Alignment:
Q  1006 atgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgag 1062  Q
    |||||| ||||||||||||| |||||||||||||||||||| |||  ||||||||||    
T  3801975 atgctctttagcaaattctgattaatgttttgatcaaataagaaacaaaagggtgag 3802031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 280
Target Start/End: Original strand, 3802212 - 3802327
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 263  Q
    ||||||||||||  |||||||||||| ||||||||  ||||||| ||||||||||| | || |||||||||||| ||| | ||| | ||| |||  ||||    
T  3802212 attttcataaaat-aggaaagcaaaactaattgtagcttcacatggttttaaagtcgaaatctaaatcataacatatgaaagaaatgcatattacgccaa 3802310  T
Q  264 attaatataactgcaaa 280  Q
    |||||| |||| |||||    
T  3802311 attaatttaaccgcaaa 3802327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 691 - 807
Target Start/End: Original strand, 3802212 - 3802327
Alignment:
Q  691 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 790  Q
    ||||||||||||  |||||||||||| ||||||||  ||||||| ||||||||||| | || |||||||||||| ||| | ||| | ||| |||  ||||    
T  3802212 attttcataaaat-aggaaagcaaaactaattgtagcttcacatggttttaaagtcgaaatctaaatcataacatatgaaagaaatgcatattacgccaa 3802310  T
Q  791 attaatataactgcaaa 807  Q
    |||||| |||| |||||    
T  3802311 attaatttaaccgcaaa 3802327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 635 - 688
Target Start/End: Complemental strand, 50668681 - 50668628
Alignment:
Q  635 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacata 688  Q
    ||||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||||    
T  50668681 agaatgaaatgggctcaattttccaagtctgacaacaatagcaagataaacata 50668628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 50668681 - 50668628
Alignment:
Q  108 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacata 161  Q
    ||||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||||    
T  50668681 agaatgaaatgggctcaattttccaagtctgacaacaatagcaagataaacata 50668628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 492 - 556
Target Start/End: Original strand, 3802432 - 3802496
Alignment:
Q  492 aattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggctgaaa 556  Q
    ||||||||||||||||||||| | |||| |||  |||||||||  |||| |||||||||||||||    
T  3802432 aattctgtttaatgttttgattacataagaaacaaaagggtgaaattatattaatatggctgaaa 3802496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 713 - 776
Target Start/End: Complemental strand, 50668103 - 50668040
Alignment:
Q  713 aaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagt 776  Q
    ||||| |||||||| ||||||| ||| ||||||||| || |||||||| ||| |||||||||||    
T  50668103 aaaaaaaattgtatcttcacatggttctaaagtcaaaatttaaatcatgacatatggacgaagt 50668040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 50668103 - 50668040
Alignment:
Q  186 aaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagt 249  Q
    ||||| |||||||| ||||||| ||| ||||||||| || |||||||| ||| |||||||||||    
T  50668103 aaaaaaaattgtatcttcacatggttctaaagtcaaaatttaaatcatgacatatggacgaagt 50668040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 3802651 - 3802767
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 263  Q
    ||||||||||||  |||||| |||||  |||||||| |||||||  |||||||||||| || |||   |||||| ||||| ||||| |||| || |||||    
T  3802651 attttcataaaat-aggaaaacaaaacgaattgtatcttcacatgattttaaagtcaaaatctaa---ataacaaatggaagaagtgcatgctagcccaa 3802746  T
Q  264 attaatataactgcaaagaac 284  Q
    ||||||| |  ||||||||||    
T  3802747 attaatacatgtgcaaagaac 3802767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 691 - 811
Target Start/End: Original strand, 3802651 - 3802767
Alignment:
Q  691 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 790  Q
    ||||||||||||  |||||| |||||  |||||||| |||||||  |||||||||||| || |||   |||||| ||||| ||||| |||| || |||||    
T  3802651 attttcataaaat-aggaaaacaaaacgaattgtatcttcacatgattttaaagtcaaaatctaa---ataacaaatggaagaagtgcatgctagcccaa 3802746  T
Q  791 attaatataactgcaaagaac 811  Q
    ||||||| |  ||||||||||    
T  3802747 attaatacatgtgcaaagaac 3802767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 446 - 556
Target Start/End: Original strand, 3803692 - 3803802
Alignment:
Q  446 cttagcaacttcatttttgtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaa 545  Q
    |||||||||||||||||||||  | ||| | | |  || | |||||||||||||||||||||||||  |||||| |||   ||||||||| ||| |||||    
T  3803692 cttagcaacttcatttttgttgttttttgagcgacacttcatagcaaattctgtttaatgttttgaagaaataagaaacagaagggtgagattaatttaa 3803791  T
Q  546 tatggctgaaa 556  Q
    ||  |||||||    
T  3803792 tacagctgaaa 3803802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 504 - 558
Target Start/End: Complemental strand, 20950031 - 20949977
Alignment:
Q  504 tgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggctgaaact 558  Q
    ||||||||||||||||| ||  ||| ||||||| ||||||||||||| |||||||    
T  20950031 tgttttgatcaaataaacaaccaaaaggtgaggatattttaatatggttgaaact 20949977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 504 - 558
Target Start/End: Complemental strand, 20951002 - 20950948
Alignment:
Q  504 tgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggctgaaact 558  Q
    ||||||||||||||||| ||  ||| ||||||| ||||||||||||| |||||||    
T  20951002 tgttttgatcaaataaacaaccaaaaggtgaggatattttaatatggttgaaact 20950948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 486 - 556
Target Start/End: Complemental strand, 50669651 - 50669581
Alignment:
Q  486 ttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggctgaaa 556  Q
    ||||||| ||||||||| |||||||||||||||| |||  ||||||||||  || |||||  |||||||||    
T  50669651 ttagcaacttctgtttattgttttgatcaaataagaaaccaaagggtgagtatactttaacgtggctgaaa 50669581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 25481831 - 25481889
Alignment:
Q  489 gcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 549  Q
    |||||||||||||| |||||||||||||||| |||   || ||||||| ||||||||||||    
T  25481831 gcaaattctgtttattgttttgatcaaataacaaa--caaaggtgaggatattttaatatg 25481889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1016 - 1076
Target Start/End: Original strand, 25481831 - 25481889
Alignment:
Q  1016 gcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 1076  Q
    |||||||||||||| |||||||||||||||| |||   || ||||||| ||||||||||||    
T  25481831 gcaaattctgtttattgttttgatcaaataacaaa--caaaggtgaggatattttaatatg 25481889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1016 - 1076
Target Start/End: Complemental strand, 25862204 - 25862146
Alignment:
Q  1016 gcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 1076  Q
    |||||||||||||| |||||||||||||||| |||   || ||||||| ||||||||||||    
T  25862204 gcaaattctgtttattgttttgatcaaataacaaa--caaaggtgaggatattttaatatg 25862146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 489 - 549
Target Start/End: Complemental strand, 25862204 - 25862146
Alignment:
Q  489 gcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 549  Q
    |||||||||||||| |||||||||||||||| |||   || ||||||| ||||||||||||    
T  25862204 gcaaattctgtttattgttttgatcaaataacaaa--caaaggtgaggatattttaatatg 25862146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1013 - 1062
Target Start/End: Complemental strand, 50669651 - 50669602
Alignment:
Q  1013 ttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgag 1062  Q
    ||||||| ||||||||| |||||||||||||||| |||  ||||||||||    
T  50669651 ttagcaacttctgtttattgttttgatcaaataagaaaccaaagggtgag 50669602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 7948 - 8026
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatgga 243  Q
    |||||||||||| || |||| |||||| |||||||| | |||| |||| ||||||||| ||||||||||||| |||||||    
T  7948 attttcataaaa-caagaaaacaaaaagaattgtatctacacaaagttctaaagtcaacatgtaaatcataagagatgga 8026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 691 - 770
Target Start/End: Original strand, 7948 - 8026
Alignment:
Q  691 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatgga 770  Q
    |||||||||||| || |||| |||||| |||||||| | |||| |||| ||||||||| ||||||||||||| |||||||    
T  7948 attttcataaaa-caagaaaacaaaaagaattgtatctacacaaagttctaaagtcaacatgtaaatcataagagatgga 8026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 5736 - 5812
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatg 241  Q
    |||||||||||| || |||| |||||| |||||||| | |||| |||| ||||||||| ||||||||||||| |||||    
T  5736 attttcataaaa-caagaaaacaaaaagaattgtatctacacaaagttctaaagtcaacatgtaaatcataagagatg 5812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 691 - 768
Target Start/End: Original strand, 5736 - 5812
Alignment:
Q  691 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatg 768  Q
    |||||||||||| || |||| |||||| |||||||| | |||| |||| ||||||||| ||||||||||||| |||||    
T  5736 attttcataaaa-caagaaaacaaaaagaattgtatctacacaaagttctaaagtcaacatgtaaatcataagagatg 5812  T

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Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 269
Target Start/End: Original strand, 52806365 - 52806467
Alignment:
Q  167 ttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaatt 266  Q
    |||||||||||| ||||| ||||| ||||| || ||||||| ||| ||||||||| || |||||| | | ||||||| | | | || |||||||||| ||    
T  52806365 ttcataaaaacaagaaagaaaaaagaattgcatcttcacattgttctaaagtcaaaatctaaatcgtgaaagatggaaggaatgcaagttaacccaagtt 52806464  T
Q  267 aat 269  Q
    |||    
T  52806465 aat 52806467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 694 - 796
Target Start/End: Original strand, 52806365 - 52806467
Alignment:
Q  694 ttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaatt 793  Q
    |||||||||||| ||||| ||||| ||||| || ||||||| ||| ||||||||| || |||||| | | ||||||| | | | || |||||||||| ||    
T  52806365 ttcataaaaacaagaaagaaaaaagaattgcatcttcacattgttctaaagtcaaaatctaaatcgtgaaagatggaaggaatgcaagttaacccaagtt 52806464  T
Q  794 aat 796  Q
    |||    
T  52806465 aat 52806467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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