View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0941_high_10 (Length: 516)

Name: NF0941_high_10
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0941_high_10
NF0941_high_10
[»] chr6 (5 HSPs)
chr6 (118-507)||(7225142-7225521)
chr6 (30-130)||(7225532-7225632)
chr6 (38-107)||(7239299-7239367)
chr6 (54-100)||(7204546-7204592)
chr6 (143-179)||(2946999-2947035)
[»] chr3 (2 HSPs)
chr3 (118-327)||(11428251-11428460)
chr3 (143-179)||(33818680-33818716)
[»] chr4 (5 HSPs)
chr4 (171-400)||(25034795-25035027)
chr4 (118-287)||(23065221-23065390)
chr4 (143-258)||(11899602-11899717)
chr4 (121-222)||(1979432-1979533)
chr4 (143-179)||(4877238-4877274)
[»] chr1 (3 HSPs)
chr1 (403-472)||(2919589-2919658)
chr1 (300-338)||(21872857-21872895)
chr1 (300-360)||(6191997-6192057)
[»] chr5 (2 HSPs)
chr5 (118-298)||(31129539-31129719)
chr5 (300-369)||(33259832-33259901)
[»] chr2 (2 HSPs)
chr2 (118-227)||(10379865-10379974)
chr2 (298-338)||(7688095-7688135)
[»] chr7 (2 HSPs)
chr7 (143-249)||(43017637-43017743)
chr7 (300-338)||(16435400-16435438)
[»] scaffold0057 (1 HSPs)
scaffold0057 (300-338)||(78068-78106)
[»] scaffold0003 (1 HSPs)
scaffold0003 (300-338)||(25030-25068)
[»] scaffold0002 (2 HSPs)
scaffold0002 (300-338)||(477007-477045)
scaffold0002 (300-338)||(483527-483565)


Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 118 - 507
Target Start/End: Complemental strand, 7225521 - 7225142
Alignment:
Q  118 gagtttttacatcgggtcacaacatatgtaaggtgacatgatgtggtaagtcaacatccttttgcatcggtttttgactgttgtgaaatcttgttttcta 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  7225521 gagtttttacatcgggtcacaacagatgtaaggtgacatgatgtggtaagtcaacatccttttacatcggttttcgactgttgtgaaatcttgttttcta 7225422  T
Q  218 catccggtctctctcccactgttgttatagacacactttaacaattgacaatgtggtttttacatcagttttaaaatagaccctgaaattaaatatgtat 317  Q
    |||||| ||||||| |||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7225421 catccgatctctcttccactgttgttat----------taacaattgacaatgtggtttttacatcagttttaaaatagaccctgaaattaaatatgtat 7225332  T
Q  318 atttcacatctgttttcaaaaccgctgttgggaaatcaattttctattttttaaatggctttacaattaagtttaaaacctgctttttcagcttctgacg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  7225331 atttcacatctgttttcaaaaccgctgttgggaaatcaattttgtattttttaaatggctttacaattaagtttaacacctgctttttcagcttctaacg 7225232  T
Q  418 gtgtcttgtgaatcttatatatataaatttccatttccgaatctcaaccaatttactactatcactacaactttcagttttgagtattat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7225231 gtgtcttgtgaatcttatatatataaatttccatttccgaatctcaaccaatttactactatcactacaactttcagttttgagtattat 7225142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 7225632 - 7225532
Alignment:
Q  30 gatattatagacacttagatcacaaaccaatagaagttgtacactgtcttatttttgcttgaaattgagaataggtcactgcaaaacagagtttttacat 129  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7225632 gatattatagacacttagatcacgaaccaatagaagttgtacaccgtcttatttttgcttgaaattgagaataggtcactgcaaaacaaagtttttacat 7225533  T
Q  130 c 130  Q
    |    
T  7225532 c 7225532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 7239367 - 7239299
Alignment:
Q  38 agacacttagatcacaaaccaatagaagttgtacactgtcttatttttgcttgaaattgagaataggtca 107  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  7239367 agacacttagatcacagaccaatagtagttgtacactttcttatttttg-tttaaattgagaataggtca 7239299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 7204592 - 7204546
Alignment:
Q  54 aaccaatagaagttgtacactgtcttatttttgcttgaaattgagaa 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  7204592 aaccaatagaagttgtacactgtcttatttttgtttgaaattgagaa 7204546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 2946999 - 2947035
Alignment:
Q  143 atgtaaggtgacatgatgtggtaagtcaacatccttt 179  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  2946999 atgtaaggtgatatgatgtggtaagtccacatccttt 2947035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 118 - 327
Target Start/End: Complemental strand, 11428460 - 11428251
Alignment:
Q  118 gagtttttacatcgggtcacaacatatgtaaggtgacatgatgtggtaagtcaacatccttttgcatcggtttttgactgttgtgaaatcttgttttcta 217  Q
    ||||||||| ||| |||  ||||  ||||||||||| ||||||||||||||| |||||||||| |||| | ||| ||| | |||||||||||||||||||    
T  11428460 gagtttttaaatcaggtggcaactgatgtaaggtgatatgatgtggtaagtccacatccttttacatcaggtttggacagatgtgaaatcttgttttcta 11428361  T
Q  218 catccggtctctctcccactgttgttatagacacactttaacaattgacaatgtggtttttacatcagttttaaaatagaccctgaaattaaatatgtat 317  Q
    |||| ||| ||||| ||||| |||| ||||||||||||||| | || | |||| |||||| ||||||| |  || |||||| ||||| | |||||| |||    
T  11428360 catcaggtttctcttccactattgtaatagacacactttaaaatttaataatggggttttcacatcagctacaagatagacactgaagtaaaatatatat 11428261  T
Q  318 atttcacatc 327  Q
    ||||||||||    
T  11428260 atttcacatc 11428251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 33818716 - 33818680
Alignment:
Q  143 atgtaaggtgacatgatgtggtaagtcaacatccttt 179  Q
    |||||||||| |||||||||||||||| |||||||||    
T  33818716 atgtaaggtgtcatgatgtggtaagtccacatccttt 33818680  T

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Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 171 - 400
Target Start/End: Complemental strand, 25035027 - 25034795
Alignment:
Q  171 acatccttttgcatcggtttttgactgttgtgaaatcttgttttctacatccggtctctctcccactgttgttatagacacactttaacaattgacaatg 270  Q
    |||||||||  |||||| ||| |||||||||||||||||| |||||||||| |||||  || |||| ||||| |||||| || ||||| | ||||||| |    
T  25035027 acatcctttcacatcgggtttcgactgttgtgaaatcttgctttctacatcaggtcttgcttccacagttgtaatagacgcattttaaaatttgacaacg 25034928  T
Q  271 tggtttttacatcagttttaaaatagaccctgaaattaaatatgtatatttcacatctgttttcaaaaccgctgttgggaaatcaa---ttttctatttt 367  Q
     |||||| ||||| ||| ||| || ||| ||||| |||||||||| ||||||||||| ||  ||||||||||  ||| ||||||||   |||| | ||||    
T  25034927 gggttttcacatctgttataagatggacactgaagttaaatatgtgtatttcacatcagtcctcaaaaccgcaattgtgaaatcaatttttttatttttt 25034828  T
Q  368 ttaaatggctttacaattaagtttaaaacctgc 400  Q
    |||||||||||||||| ||||||| | ||||||    
T  25034827 ttaaatggctttacaaataagtttgacacctgc 25034795  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 118 - 287
Target Start/End: Original strand, 23065221 - 23065390
Alignment:
Q  118 gagtttttacatcgggtcacaacatatgtaaggtgacatgatgtggtaagtcaacatccttttgcatcggtttttgactgttgtgaaatcttgttttcta 217  Q
    ||||||||| ||| |||  ||||  ||||||| |||||||| |||||||||| |||||||||  ||| || ||| |||||||||||||||||||||||||    
T  23065221 gagtttttatatcaggtggcaaccgatgtaagatgacatgacgtggtaagtctacatcctttcacattgggtttggactgttgtgaaatcttgttttcta 23065320  T
Q  218 catccggtctctctcccactgttgttatagacacactttaacaattgacaatgtggtttttacatcagtt 287  Q
    |||| |||| || ||||||| |||| |||||| |||||||| |  |||||||  |||||| |||||||||    
T  23065321 catcaggtcactgtcccactattgtaatagacgcactttaaaatatgacaataaggttttcacatcagtt 23065390  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 11899717 - 11899602
Alignment:
Q  143 atgtaaggtgacatgatgtggtaagtcaacatccttttgcatcggtttttgactgttgtgaaatcttgttttctacatccggtctctctcccactgttgt 242  Q
    |||||||||||||||||||||||| || |||||||||  |||||| ||| |||||||||||||||||||||| |||||| ||||||||| |||| |||||    
T  11899717 atgtaaggtgacatgatgtggtaaatctacatcctttcacatcgggtttcgactgttgtgaaatcttgttttttacatcaggtctctcttccacagttgt 11899618  T
Q  243 tatagacacactttaa 258  Q
     |||||| ||| ||||    
T  11899617 aatagacgcacattaa 11899602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 1979432 - 1979533
Alignment:
Q  121 tttttacatcgggtcacaacatatgtaaggtgacatgatgtggtaagtcaacatccttttgcatcggtttttgactgttgtgaaatcttgttttctacat 220  Q
    |||| ||||||| | |||||  ||||||||||||||||||||||||||| |||||||||  |||||| |||  |||| ||| |||||||| |||||||||    
T  1979432 ttttcacatcggttgacaaccgatgtaaggtgacatgatgtggtaagtccacatcctttcacatcgggtttcaactgatgtaaaatcttgatttctacat 1979531  T
Q  221 cc 222  Q
    ||    
T  1979532 cc 1979533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 4877274 - 4877238
Alignment:
Q  143 atgtaaggtgacatgatgtggtaagtcaacatccttt 179  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  4877274 atgtaaggtgatatgatgtggtaagtccacatccttt 4877238  T

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Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 403 - 472
Target Start/End: Complemental strand, 2919658 - 2919589
Alignment:
Q  403 tttcagcttctgacggtgtcttgtgaatcttatatatataaatttccatttccgaatctcaaccaattta 472  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2919658 tttcagcttctaacggtgtcttgtgaatcttatatatataaatttccatttccgaatctcaaccaattta 2919589  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 21872857 - 21872895
Alignment:
Q  300 ctgaaattaaatatgtatatttcacatctgttttcaaaa 338  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  21872857 ctgaagttaaatatgtatatttcacatcagttttcaaaa 21872895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 6192057 - 6191997
Alignment:
Q  300 ctgaaattaaatatgtatatttcacatctgttttcaaaaccgctgttgggaaatcaatttt 360  Q
    ||||| |||||||||||||||| ||||| |||||||||| | |||| | ||||| ||||||    
T  6192057 ctgaagttaaatatgtatattttacatcagttttcaaaatcactgtagtgaaataaatttt 6191997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 118 - 298
Target Start/End: Original strand, 31129539 - 31129719
Alignment:
Q  118 gagtttttacatcgggtcacaacatatgtaaggtgacatgatgtggtaagtcaacatccttttgcatcggtttttgactgttgtgaaatcttgttttcta 217  Q
    ||||||| ||||| |||  ||||  |||||||||| |||||||||||||||| ||| |||||  |||| ||| | ||||| |||||||||||||||||||    
T  31129539 gagttttcacatcaggtggcaactgatgtaaggtgtcatgatgtggtaagtccacaccctttcccatcagttgtggactgatgtgaaatcttgttttcta 31129638  T
Q  218 catccggtctctctcccactgttgttatagacacactttaacaattgacaatgtggtttttacatcagttttaaaatagac 298  Q
    |||| ||| | | | |||||||||| |||||  |||||||| || ||| |||| |||||| ||||||||| ||| ||||||    
T  31129639 catcaggtttatgttccactgttgtaatagatgcactttaaaaaatgataatggggttttcacatcagttataagatagac 31129719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 33259832 - 33259901
Alignment:
Q  300 ctgaaattaaatatgtatatttcacatctgttttcaaaaccgctgttgggaaatcaattttctatttttt 369  Q
    ||||| |||||||||||||||||||||| |||||||||| | |||| | ||||  |||||| ||||||||    
T  33259832 ctgaagttaaatatgtatatttcacatcagttttcaaaatcactgtagtgaaacaaattttttatttttt 33259901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 10379865 - 10379974
Alignment:
Q  118 gagtttttacatcgggtcacaacatatgtaaggtgacatgatgtggtaagtcaacatccttttgcatcggtttttgactgttgtgaaatcttgttttcta 217  Q
    ||||||||||||| |||  ||||  |||||| |||||||||||| ||||||| |||||||||  | |||| | | |||||||||||||||||| ||||||    
T  10379865 gagtttttacatcaggtggcaaccgatgtaaagtgacatgatgtcgtaagtccacatcctttcacctcgggtctagactgttgtgaaatcttgctttcta 10379964  T
Q  218 catccggtct 227  Q
    |||| |||||    
T  10379965 catcaggtct 10379974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 7688095 - 7688135
Alignment:
Q  298 ccctgaaattaaatatgtatatttcacatctgttttcaaaa 338  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  7688095 ccctgaagttaaatatgtatatttcacatcagttttcaaaa 7688135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 43017637 - 43017743
Alignment:
Q  143 atgtaaggtgacatgatgtggtaagtcaacatccttttgcatcggtttttgactgttgtgaaatcttg-ttttctacatccggtctctctcccactgttg 241  Q
    ||||||||||| ||||||||||||||| |||||||||  |||| | ||  || || ||||||||||||  |||||||||| |||| | || |||||||||    
T  43017637 atgtaaggtgatatgatgtggtaagtccacatcctttcacatcaggttgcgattgatgtgaaatcttgaatttctacatcaggtc-cgcttccactgttg 43017735  T
Q  242 ttatagac 249  Q
    | ||||||    
T  43017736 taatagac 43017743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 16435438 - 16435400
Alignment:
Q  300 ctgaaattaaatatgtatatttcacatctgttttcaaaa 338  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  16435438 ctgaagttaaatatgtatatttcacatcagttttcaaaa 16435400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 78068 - 78106
Alignment:
Q  300 ctgaaattaaatatgtatatttcacatctgttttcaaaa 338  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  78068 ctgaagttaaatatgtatatttcacatcagttttcaaaa 78106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 25068 - 25030
Alignment:
Q  300 ctgaaattaaatatgtatatttcacatctgttttcaaaa 338  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  25068 ctgaagttaaatatgtatatttcacatcagttttcaaaa 25030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 477007 - 477045
Alignment:
Q  300 ctgaaattaaatatgtatatttcacatctgttttcaaaa 338  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  477007 ctgaagttaaatatgtatatttcacatcagttttcaaaa 477045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 483527 - 483565
Alignment:
Q  300 ctgaaattaaatatgtatatttcacatctgttttcaaaa 338  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  483527 ctgaagttaaatatgtatatttcacatcagttttcaaaa 483565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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