View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_high_14 (Length: 501)
Name: NF0941_high_14
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 30 - 434
Target Start/End: Original strand, 44459680 - 44460084
Alignment:
| Q |
30 |
gaagctgcaagaaaggtgcaaatcaatgcataagttactttctgatcatataaaccgcgaggaaatagaaatttggcctataattagagaattcttctcg |
129 |
Q |
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| T |
44459680 |
gaagctgcaagaaaggtgcaaatcaatgcataagttactttctgatcatataaaccgcgaggaaatagaaatttggcctataattagagaattcttctcg |
44459779 |
T |
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| Q |
130 |
aaccgggagcaagggaagatcataggatgcatacttggaagaataagtgcagaaatattacaagatatgataccttggctaatggcatctttaacacagg |
229 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44459780 |
aaccgggagcaagggaagatcatagggtgcatacttggaagaataagtgcagaaatattacaagatatgataccttggctaatggcatctttaacacagg |
44459879 |
T |
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| Q |
230 |
aagaacaacatgttttaatgttcttatggtccatggctactaagaatacaatgtttgatgaatggttaggtgaatggtggaatgggtacagtgtagctaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44459880 |
aagaacaacatgttttaatgttcttatggtccatggctactaagaatacaatgtttgatgaatggttaggtgaatggtggaatgggtacagtgtagctaa |
44459979 |
T |
|
| Q |
330 |
ggcagcagatggatcaaatgatgcccctctacagaatgttgagccactggaaattatatccaaatatttgtcagaagaggttcttaatgcattacaagaa |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44459980 |
ggcagcagatggatcaaatgatgcccctctacagaatgttgagccactggaaattatatccaaatatttgtcagaagaggttcttaatgcattacaagaa |
44460079 |
T |
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| Q |
430 |
taatc |
434 |
Q |
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|||| |
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| T |
44460080 |
gaatc |
44460084 |
T |
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