View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0941_high_2 (Length: 743)

Name: NF0941_high_2
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0941_high_2
NF0941_high_2
[»] chr7 (7 HSPs)
chr7 (30-734)||(24518871-24519574)
chr7 (30-180)||(24508149-24508291)
chr7 (505-564)||(41467536-41467595)
chr7 (506-564)||(41742383-41742441)
chr7 (484-546)||(4958924-4958986)
chr7 (525-563)||(32327629-32327667)
chr7 (519-564)||(2397867-2397912)
[»] chr3 (1 HSPs)
chr3 (484-564)||(51227406-51227486)
[»] chr4 (3 HSPs)
chr4 (438-564)||(55291240-55291364)
chr4 (492-559)||(34933473-34933540)
chr4 (503-564)||(34360903-34360964)
[»] chr2 (5 HSPs)
chr2 (484-564)||(17181744-17181824)
chr2 (484-564)||(34353276-34353356)
chr2 (484-564)||(37357279-37357359)
chr2 (438-564)||(15507047-15507171)
chr2 (525-559)||(13298201-13298235)
[»] chr5 (1 HSPs)
chr5 (484-564)||(38353644-38353724)
[»] chr1 (1 HSPs)
chr1 (506-564)||(3430599-3430657)


Alignment Details
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 30 - 734
Target Start/End: Original strand, 24518871 - 24519574
Alignment:
Q  30 ctaattttaacatttcttgacaataaatgattccttaattagttaagttgtatgcaaaacagacagcacactatacttgctcaaatatgatgttctttat 129  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  24518871 ctaattttaatatttcttgacaataaatgattccttaattagttaagttgtatgcaaaacagacaacaaactatacttgctcaaatatgatgttctttat 24518970  T
Q  130 accatttaaaagctaacaaaa-atatctaaaactctactttttatgggaaaatcaaatttgacatctaggatagtaaaatatgaggtatacttgcttgcg 228  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24518971 accatttcaaagctaacaaaaaatatctagaactctactttttgtggcaaaatcaaatttgacatctaggatagtaaaatatgaggtatacttgcttggg 24519070  T
Q  229 cataaggccaaatgaatatatttaagcagacatacaaaacctaaagaaaaataatgtctataattcttaagaataccatgtatgtatataaagttatttt 328  Q
    || ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24519071 cacaagtccaaataaatatatttaagcagacatacaaaacctaaagaaaaataatgtctataattcttaagaataccatgtaagtatataaagttatttt 24519170  T
Q  329 aagtgtcatatcattacttaaaccgactatttggttatgttaacacttagaaatcacatttaagaatctctccttaatttaactattgaaatcccacatt 428  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  24519171 aagtgtcatatcattacttaagccgactatttggttatgttaacacttagaaatcacatttaagaatctctcctaaatttaattattgaaatcccacatt 24519270  T
Q  429 aaaaaacatagggaaatattaacctatgccttcaggacactgattaaagaagcaaaaatatagtaatatgacactgaaacttgtgcaataaacttctcaa 528  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||||||||| ||||||||||    
T  24519271 aaaaaatatagggaaatattaacctgtgccttcaggacactgattaaagaagcaaaaatataataatatgatagtgaaatttgtgcaatcaacttctcaa 24519370  T
Q  529 aaatctaaaaagtgttatttttaacttaaaattttcnnnnnnnggttttcttaatagtgccatgagggcaccggttaacataaccctcaatattctctca 628  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  24519371 aaatctaaaaagtgttatttttaacttaaaattttctttttttggttttcttaatagtgccct--tggcaccggttaacataaccctcaatattctctca 24519468  T
Q  629 ttttcacctatataaagaatacactaccatgcgcgtaatgagaaattttgttatctatgaattgtaatacccttaattttccatcattgtgtttacttag 728  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24519469 ttttcacctatataaagaatacactaccatgcgtgtaatgagaaattttgttatctatgaattgtaatacccttaattttccatcattgtgtttacttag 24519568  T
Q  729 aattat 734  Q
    ||||||    
T  24519569 aattat 24519574  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 30 - 180
Target Start/End: Original strand, 24508149 - 24508291
Alignment:
Q  30 ctaattttaacatttcttgacaataaatgattccttaattagttaagttgtatgcaaaacagacagcacactatacttgctcaaatatgatgttctttat 129  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||       |||||||| ||||||| ||||||||||||    
T  24508149 ctaattttaacatttcttggcagtaaatgattccttaattagttaagttgt-tgcaaaacagac-------tatacttgttcaaataagatgttctttat 24508240  T
Q  130 accatttaaaagctaacaaaaatatctaaaactctactttttatgggaaaa 180  Q
    ||||||| |||||||||||||||||| ||||||||| || ||| |||||||    
T  24508241 accatttgaaagctaacaaaaatatccaaaactctatttattacgggaaaa 24508291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 505 - 564
Target Start/End: Complemental strand, 41467595 - 41467536
Alignment:
Q  505 aaacttgtgcaataaacttctcaaaaatctaaaaagtgttatttttaacttaaaattttc 564  Q
    ||||||||||| | |||||||||||| |||||||| || |||||| ||||||||||||||    
T  41467595 aaacttgtgcattcaacttctcaaaagtctaaaaaatggtattttcaacttaaaattttc 41467536  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 506 - 564
Target Start/End: Complemental strand, 41742441 - 41742383
Alignment:
Q  506 aacttgtgcaataaacttctcaaaaatctaaaaagtgttatttttaacttaaaattttc 564  Q
    |||||||||| | |||||||||||||||||||||||| |||||| |||| |||| ||||    
T  41742441 aacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttc 41742383  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 546
Target Start/End: Complemental strand, 4958986 - 4958924
Alignment:
Q  484 aaatatagtaatatgaca-ctgaaacttgtgcaataaacttctcaaaaatctaaaaagtgttat 546  Q
    |||||||||||||||||| ||||| |||||||| | |||| || ||||||||||||||||||||    
T  4958986 aaatatagtaatatgacatctgaa-cttgtgcagtcaactccttaaaaatctaaaaagtgttat 4958924  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 563
Target Start/End: Complemental strand, 32327667 - 32327629
Alignment:
Q  525 tcaaaaatctaaaaagtgttatttttaacttaaaatttt 563  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  32327667 tcaaaagtctaaaaagtgttatttttatcttaaaatttt 32327629  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 2397912 - 2397867
Alignment:
Q  519 aacttctcaaaaatctaaaaagtgttatttttaacttaaaattttc 564  Q
    |||||||||||| ||||||||||| |||||| ||||||||| ||||    
T  2397912 aacttctcaaaagtctaaaaagtggtattttgaacttaaaactttc 2397867  T

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Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 484 - 564
Target Start/End: Original strand, 51227406 - 51227486
Alignment:
Q  484 aaatatagtaatatgacactgaaacttgtgcaataaacttctcaaaaatctaaaaagtgttatttttaacttaaaattttc 564  Q
    |||||| |||||||| || || ||||||  |||| |||| |||||||||||||||||||||||||||||||||||| ||||    
T  51227406 aaatatggtaatatggcattggaacttgaacaattaactcctcaaaaatctaaaaagtgttatttttaacttaaaactttc 51227486  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 438 - 564
Target Start/End: Original strand, 55291240 - 55291364
Alignment:
Q  438 agggaaatattaacctatgccttcaggacactgattaaagaagcaaaaatatagtaatatgacactgaaacttgtgcaataaacttctcaaaaatctaaa 537  Q
    |||||||| ||||||  |||| ||||| || ||||||| ||||||||  ||||||||| |  || ||||||||||||| |||||||||||||||| ||||    
T  55291240 agggaaatgttaaccagtgccctcagggcaatgattaaggaagcaaa--tatagtaattttgcattgaaacttgtgcattaaacttctcaaaaatataaa 55291337  T
Q  538 aagtgttatttttaacttaaaattttc 564  Q
    || || |||||| ||| ||||| ||||    
T  55291338 aaatgatattttcaacctaaaactttc 55291364  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 492 - 559
Target Start/End: Complemental strand, 34933540 - 34933473
Alignment:
Q  492 taatatgacactgaaacttgtgcaataaacttctcaaaaatctaaaaagtgttatttttaacttaaaa 559  Q
    |||||||||| |  || ||||||||| |||| |||||||||||||||||| |||||||||||||||||    
T  34933540 taatatgacagttgaatttgtgcaatcaactcctcaaaaatctaaaaagtattatttttaacttaaaa 34933473  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 564
Target Start/End: Original strand, 34360903 - 34360964
Alignment:
Q  503 tgaaacttgtgcaataaacttctcaaaaatctaaaaagtgttatttttaacttaaaattttc 564  Q
    ||||||||||||| | |||| ||||||| ||||||||||| |||||| ||||||||| ||||    
T  34360903 tgaaacttgtgcattcaactcctcaaaagtctaaaaagtggtattttcaacttaaaactttc 34360964  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 484 - 564
Target Start/End: Original strand, 17181744 - 17181824
Alignment:
Q  484 aaatatagtaatatgacactgaaacttgtgcaataaacttctcaaaaatctaaaaagtgttatttttaacttaaaattttc 564  Q
    ||||||||||| |||||| || |||| ||| | ||||||||||||||||||||||| ||| |||||||| |||||| ||||    
T  17181744 aaatatagtaacatgacattggaactagtgtagtaaacttctcaaaaatctaaaaattgtgatttttaatttaaaactttc 17181824  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 484 - 564
Target Start/End: Original strand, 34353276 - 34353356
Alignment:
Q  484 aaatatagtaatatgacactgaaacttgtgcaataaacttctcaaaaatctaaaaagtgttatttttaacttaaaattttc 564  Q
    |||||||||||| |  || ||||||||||||| | |||| ||||||| | ||||||||| |||||| ||||||||||||||    
T  34353276 aaatatagtaattttgcattgaaacttgtgcattcaactcctcaaaagtttaaaaagtggtattttcaacttaaaattttc 34353356  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 564
Target Start/End: Original strand, 37357279 - 37357359
Alignment:
Q  484 aaatatagtaatatgacactgaaacttgtgcaataaacttctcaaaaatctaaaaagtgttatttttaacttaaaattttc 564  Q
    |||||||||||| |  || ||||||||||||| | |||||||||||| | ||||||||| |||||| ||  ||||||||||    
T  37357279 aaatatagtaatcttgcattgaaacttgtgcattcaacttctcaaaagtataaaaagtgatattttcaatctaaaattttc 37357359  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 564
Target Start/End: Complemental strand, 15507171 - 15507047
Alignment:
Q  438 agggaaatattaacctatgccttcaggacactgattaaagaagcaaaaatatagtaatatgacactgaaacttgtgcaataaacttctcaaaaatctaaa 537  Q
    ||||||||||| ||| ||| | || || || ||||||||||||||||  |||| |||| |  || |  |||||||||| | |||| || |||||||||||    
T  15507171 agggaaatattgaccaatgtcctccgggcaatgattaaagaagcaaa--tataataattttgcattagaacttgtgcatttaactccttaaaaatctaaa 15507074  T
Q  538 aagtgttatttttaacttaaaattttc 564  Q
    ||||| |||||| ||||||||| ||||    
T  15507073 aagtggtattttaaacttaaaactttc 15507047  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 559
Target Start/End: Complemental strand, 13298235 - 13298201
Alignment:
Q  525 tcaaaaatctaaaaagtgttatttttaacttaaaa 559  Q
    |||||||| ||||||||||||||||||||||||||    
T  13298235 tcaaaaatttaaaaagtgttatttttaacttaaaa 13298201  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 564
Target Start/End: Complemental strand, 38353724 - 38353644
Alignment:
Q  484 aaatatagtaatatgacactgaaacttgtgcaataaacttctcaaaaatctaaaaagtgttatttttaacttaaaattttc 564  Q
    |||||||||||| |  || || |||||||||| | |||| ||||||| ||||||||||| |||||| ||||||||| ||||    
T  38353724 aaatatagtaatctcgcattggaacttgtgcattcaactcctcaaaagtctaaaaagtggtattttcaacttaaaactttc 38353644  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 506 - 564
Target Start/End: Original strand, 3430599 - 3430657
Alignment:
Q  506 aacttgtgcaataaacttctcaaaaatctaaaaagtgttatttttaacttaaaattttc 564  Q
    |||||||||| | |||||||||||| | ||||||||| |||||||||| ||||| ||||    
T  3430599 aacttgtgcattcaacttctcaaaagtataaaaagtgatatttttaacctaaaactttc 3430657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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