View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_high_24 (Length: 436)
Name: NF0941_high_24
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 30 - 417
Target Start/End: Complemental strand, 43550886 - 43550499
Alignment:
| Q |
30 |
aaaataaaccaaacctgcactacaaccaaacaaatagctgctacatgaactaattaaatattagttaaacttgtcttacctcaattatctaaatgatcag |
129 |
Q |
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| T |
43550886 |
aaaataaaccaaacctgcactacaaccaaacaaatagctgctacatgaactaattaaatattagttaaacttgtcttacctcaattatctaaatgatcag |
43550787 |
T |
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| Q |
130 |
atcaaacgtaagattctattgcagcaggaattgtgttttcaacgaggcctgagtgtctgcttgacactggttagttcttgttatctgctttgtaaaattt |
229 |
Q |
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| T |
43550786 |
atcaaacgtaagattctattgcagcaggaattgtgttttcaacgaggcctgagtgtctgcttgacactggttagttcttgttatctgctttgtaaaattt |
43550687 |
T |
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| Q |
230 |
caggtcaaagcatagagatgcggtatcattgtatacgagaggcgttggagatgaagttggtttcacttgagtcatcagggaaagatttgttgggtgtttg |
329 |
Q |
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| T |
43550686 |
caggtcaaagcatagagatgcggtatcattgtatacgagaggcgttggagatgaagttggtttcacttgagtcatcagggaaagatttgttgggtgtttg |
43550587 |
T |
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| Q |
330 |
tgtgttgattacttgatttaattgggccaagcccacgtgtagttaagaaaaagggaattgtaagcaaatccctaattctacaagcttg |
417 |
Q |
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| T |
43550586 |
tgtgttgattacttgatttaattgggccaagcccacgtgtagttaagaaaaagggaattgtaagcaaatccctaattctacaagcttg |
43550499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 17737792 - 17737871
Alignment:
| Q |
223 |
aaaatttcaggtcaaagcata--gagatgcggtatcattgtatacgagaggcgttggagatgaagttggtttcacttgag |
300 |
Q |
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| T |
17737792 |
aaaaattcaggtaaaagcatattgagttgcggtatcattgtatacaagaggcgttggagatgaagttgtgttcacttgag |
17737871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 423
Target Start/End: Original strand, 17738042 - 17738089
Alignment:
| Q |
376 |
gaaaaagggaattgtaagcaaatccctaattctacaagcttgcaacag |
423 |
Q |
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||||||||||||| || |||||||||||||||||||||||| ||||| |
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| T |
17738042 |
gaaaaagggaattaaaatcaaatccctaattctacaagcttgtaacag |
17738089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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