View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0941_high_29 (Length: 417)

Name: NF0941_high_29
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0941_high_29
NF0941_high_29
[»] chr4 (1 HSPs)
chr4 (29-417)||(51845067-51845455)


Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 29 - 417
Target Start/End: Original strand, 51845067 - 51845455
Alignment:
Q  29 agttacatctcgataacaatgagttctctggtcctattccagaattcaaacaagatattaaatctttagacgtgtctaacaacaagttacaaggtgcaat 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51845067 agttacatctcgataacaatgagttctctggtcctattccagaattcaaacaagatattaaatctttagacatgtctaacaacaagttacaaggtgcaat 51845166  T
Q  129 acctggtcccttgtccaagtatgaggcaaaatcttttgcaggaaatgaagagctttgtgggaagccacttgacaaagcatgcgatccttcttcggattta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51845167 acctggtcccttgtccaagtatgaggcaaaatcttttgcaggaaatgaagagctttgtgggaagccacttgacaaagcatgcgatccttcttcggattta 51845266  T
Q  229 acgtcaccacctagcgatggatccggacaagatannnnnnnnnnnnnnnnnnnnactggttgggttttaaagtttattggaattcttttggttgctgcct 328  Q
    ||||||||||||||||||||||||||||||||||                    |||||||||| |||||||||||||||||||||||||||||||||||    
T  51845267 acgtcaccacctagcgatggatccggacaagatagtggtggtggtggtggtggtactggttgggctttaaagtttattggaattcttttggttgctgcct 51845366  T
Q  329 tatttgttgtgtttgtcacgtttattaaatcgaaacgtagaaaggacgatgatttcagtgttatgagtagagaaaacaatgaagatatc 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51845367 tatttgttgtgtttgtcacgtttattaaatcgaaacgtagaaaggacgatgatttcagtgttatgagtagagaaaacaatgaagatatc 51845455  T

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