View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0941_high_3 (Length: 660)

Name: NF0941_high_3
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0941_high_3
NF0941_high_3
[»] chr4 (24 HSPs)
chr4 (164-631)||(46015526-46015993)
chr4 (164-323)||(46428196-46428355)
chr4 (167-323)||(46027879-46028034)
chr4 (369-527)||(46027579-46027737)
chr4 (367-573)||(46427900-46428095)
chr4 (108-163)||(46016023-46016078)
chr4 (105-159)||(46428384-46428438)
chr4 (173-323)||(46303817-46303969)
chr4 (173-315)||(46021197-46021341)
chr4 (446-550)||(46021042-46021144)
chr4 (485-550)||(46428520-46428584)
chr4 (164-260)||(46015351-46015446)
chr4 (164-260)||(46020583-46020678)
chr4 (189-263)||(46020784-46020861)
chr4 (108-163)||(46020921-46020976)
chr4 (424-547)||(46304004-46304125)
chr4 (1-36)||(46428507-46428542)
chr4 (494-547)||(46028205-46028258)
chr4 (164-260)||(46246255-46246350)
chr4 (495-554)||(24803076-24803135)
chr4 (181-230)||(41074446-41074495)
chr4 (3-36)||(46021029-46021062)
chr4 (104-161)||(46028078-46028135)
chr4 (173-249)||(14320569-14320645)
[»] chr1 (16 HSPs)
chr1 (202-310)||(3804121-3804229)
chr1 (178-295)||(3801740-3801859)
chr1 (480-550)||(50667478-50667548)
chr1 (479-535)||(3801975-3802031)
chr1 (164-280)||(3802212-3802327)
chr1 (108-161)||(50668628-50668681)
chr1 (186-249)||(50668040-50668103)
chr1 (164-284)||(3802651-3802767)
chr1 (504-554)||(20949981-20950031)
chr1 (504-554)||(20950952-20951002)
chr1 (480-554)||(50668298-50668372)
chr1 (446-547)||(3803692-3803793)
chr1 (489-549)||(25481831-25481889)
chr1 (489-549)||(25862146-25862204)
chr1 (486-535)||(50669602-50669651)
chr1 (482-549)||(25887882-25887947)
[»] chr8 (4 HSPs)
chr8 (492-550)||(4525565-4525623)
chr8 (164-241)||(4522939-4523015)
chr8 (489-550)||(4522770-4522831)
chr8 (173-258)||(4525320-4525403)
[»] scaffold0079 (1 HSPs)
scaffold0079 (164-243)||(7948-8026)
[»] scaffold0384 (1 HSPs)
scaffold0384 (164-241)||(5736-5812)
[»] chr3 (1 HSPs)
chr3 (167-269)||(52806365-52806467)


Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 164 - 631
Target Start/End: Complemental strand, 46015993 - 46015526
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46015993 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 46015894  T
Q  264 attaatataactgcaaagaacatatcaatacaccattacagcattgagtaaaacttacttgctcnnnnnnnattattagcaataaactgtttctctcgct 363  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||||||| |||||||||||||||||    
T  46015893 attaatataactgcaaagaacatatcaatacatcattacagcattgagtaaaacttacttgctctttttttattattagcaagaaactgtttctctcgct 46015794  T
Q  364 ctgtggcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaaatttctccttgtgcgtcttaccttttgtttcttagcaacttcattttt 463  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||||||||||||||    
T  46015793 ctgcggcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaactttctccctatgcgtcttactttttgtttcttagcaacttcattttt 46015694  T
Q  464 gtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggttgattgaaagtt 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46015693 gtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggttgattgaaagtt 46015594  T
Q  564 aaaaaaggaacaaggcacaacaacaatagcaacgaacagaatagaagaacggcaatggatataataat 631  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  46015593 aaaaaaggaacaaggcacaacaacaatagcaactaacagaatagaagaacggcattggatataataat 46015526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 164 - 323
Target Start/End: Complemental strand, 46428355 - 46428196
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 263  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  46428355 attttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaa 46428256  T
Q  264 attaatataactgcaaagaacatatcaatacaccattacagcattgagtaaaacttactt 323  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46428255 attaatttaactgcaaagaacatatcaatataccattacagcattgagtaaaacttactt 46428196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 167 - 323
Target Start/End: Complemental strand, 46028034 - 46027879
Alignment:
Q  167 ttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaatt 266  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||    
T  46028034 ttcataaaaacaggaaagcaaaaataattgtatcttcacatagttt-aaagtcaaaatttaaatcataacagatggacgaagtacatgttaacctaaatt 46027936  T
Q  267 aatataactgcaaagaacatatcaatacaccattacagcattgagtaaaacttactt 323  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46027935 aatttaactgcaaagaacatatcaatacaccattacagcattgagtaaaacttactt 46027879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 369 - 527
Target Start/End: Complemental strand, 46027737 - 46027579
Alignment:
Q  369 gcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaaatttctccttgtgcgtcttaccttttgtttcttagcaacttcatttttgtttg 468  Q
    |||||||||||||||||||||||||||||||||| | ||| |||||| |||||| |||||| |||||| ||||| ||| |||||||||||||||||||||    
T  46027737 gcaacttcgttcttgtttcttgcacgacgaacatacaccacacgaaactttctctttgtgcttcttactttttgcttcatagcaacttcatttttgtttg 46027638  T
Q  469 tatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaa 527  Q
    || |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  46027637 taattaaacaacgctcctcagcaaattctgtttaatgttttgatcaaataaaatatgaa 46027579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 367 - 573
Target Start/End: Complemental strand, 46428095 - 46427900
Alignment:
Q  367 tggcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaaatttctccttgtgcgtcttaccttttgtttcttagcaacttcatttttgtt 466  Q
    ||||||||||||||||||||||||||||||||||||       |||||| |||||| |||||| |||||| || ||  |||||||||||||| ||||| |    
T  46428095 tggcaacttcgttcttgtttcttgcacgacgaacatc------acgaaactttctctttgtgcttcttactttctgcctcttagcaacttcacttttgct 46428002  T
Q  467 tgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggttgattgaaagttaaa 566  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||  ||| || ||||||| ||||    ||||||||||||    
T  46428001 tgtatttaaacaatgctctttagcaaattctgtttaatgttttgatcaaata-aaaatgaaagattgatgtaattttaacatgg----ttgaaagttaaa 46427907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 46016078 - 46016023
Alignment:
Q  108 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacatatg 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46016078 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacatatg 46016023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 46428438 - 46428384
Alignment:
Q  105 aatagaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaaca 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428438 aatagaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaaca 46428384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 173 - 323
Target Start/End: Original strand, 46303817 - 46303969
Alignment:
Q  173 aaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaa-cccaaattaatat 271  Q
    |||| ||||||||| ||| |||||| | ||||||||||||||||||||| || |||||||||||||||||| ||| | |||||||| |||||  |||| |    
T  46303817 aaaataggaaagcataaagaattgtgtcttcacatagttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgttaaccccaagctaattt 46303916  T
Q  272 aactgcaaagaacatatcaatacaccattacagcattg-agtaaaacttactt 323  Q
     || ||||||||||| | |||||  ||| ||| ||||| ||||||||||||||    
T  46303917 cacagcaaagaacatgttaatacgacatcacaacattgaagtaaaacttactt 46303969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 173 - 315
Target Start/End: Complemental strand, 46021341 - 46021197
Alignment:
Q  173 aaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaattaatata 272  Q
    |||||||||||||| ||| |||||| | |||| ||  ||||||||||||  | |||||||||||||||||| | ||| ||||||||| ||||||||| ||    
T  46021341 aaaacaggaaagcagaaagaattgtgtcttcaaatgattttaaagtcaa--tctaaatcataacagatggatggagtgcatgttaactcaaattaattta 46021244  T
Q  273 actgcaaagaacat----atcaatacaccattacagcattgagtaaa 315  Q
    |||||||| || ||    || |||||| |||||||||||||||||||    
T  46021243 actgcaaataatatattaattaatacaacattacagcattgagtaaa 46021197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 446 - 550
Target Start/End: Complemental strand, 46021144 - 46021042
Alignment:
Q  446 cttagcaacttcatttttgtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaa 545  Q
    |||| ||||||||||||||||  | ||| ||| | ||| |||| |||||||||||||||||||| || |||||| |||||||  ||||||||||||||||    
T  46021144 cttaccaacttcatttttgttgttttttgaactacgcttcttaccaaattctgtttaatgtttttatgaaataagaaatgaa--ggtgaggttattttaa 46021047  T
Q  546 tatgg 550  Q
    |||||    
T  46021046 tatgg 46021042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 485 - 550
Target Start/End: Complemental strand, 46428584 - 46428520
Alignment:
Q  485 cttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatgg 550  Q
    |||| |||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  46428584 cttaccaaattctgtttaatgttttgatcaattaagaaatg-aagggtgaggttattttaatatgg 46428520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 46015446 - 46015351
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacc 260  Q
    |||||||||||| ||||||| ||| || |||| ||| ||||||| |||||||| |||| ||||| ||||||||||||||| ||||| ||||||||||    
T  46015446 attttcataaaa-caggaaaacaacaagaattttatcttcacatggttttaaactcaaaatgtacatcataacagatggatgaagtgcatgttaacc 46015351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 46020678 - 46020583
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacc 260  Q
    ||||||||||||| |||||| |||||| |||||||| ||||||| |||||||| |||  | |||||||||||||||||||  |||| ||||||||||    
T  46020678 attttcataaaaa-aggaaaacaaaaagaattgtatcttcacatggttttaaactcataaggtaaatcataacagatggattaagtgcatgttaacc 46020583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 46020861 - 46020784
Alignment:
Q  189 aataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatgg---acgaagtacatgttaacccaa 263  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||   | | |||||||||||||||||    
T  46020861 aataattgtatcttcacatagttttaaagtcaaaacgtaaatcataacagatggatcaagtagtacatgttaacccaa 46020784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 46020976 - 46020921
Alignment:
Q  108 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacatatg 163  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||    
T  46020976 agaatgaaatgggctgaatttcccaagtctggcaacaacggcaagatagacatatg 46020921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 424 - 547
Target Start/End: Original strand, 46304004 - 46304125
Alignment:
Q  424 ttgtgcgtcttaccttttgtttcttagcaacttcatttttgtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaa 523  Q
    ||||||| | ||| ||||| |||| ||||||||||||||||||  | ||| |   | |||||||||||||||||| || ||||||||||||| ||| |||    
T  46304004 ttgtgcgccctactttttgcttctcagcaacttcatttttgttgttttttgagtgacgctccttagcaaattctgatttatgttttgatcaattaagaaa 46304103  T
Q  524 tgaaagggtgaggttattttaata 547  Q
       ||||||||| |||||||||||    
T  46304104 --caagggtgagattattttaata 46304125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 46428542 - 46428507
Alignment:
Q  1 agggtgaggttattttaatatggctgaaactgttaa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  46428542 agggtgaggttattttaatatggctgaaactgttaa 46428507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 494 - 547
Target Start/End: Complemental strand, 46028258 - 46028205
Alignment:
Q  494 ttctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaata 547  Q
    ||||||| |||||||||||||||||| ||| ||||||||||| |||| ||||||    
T  46028258 ttctgttaaatgttttgatcaaataagaaacgaaagggtgagattatattaata 46028205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 260
Target Start/End: Original strand, 46246255 - 46246350
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacc 260  Q
    ||||||||||||| ||||||  ||||| |||||||| ||||||  |||||||| | |  | |||||||||||||||||||  |||| ||||||||||    
T  46246255 attttcataaaaa-aggaaaaaaaaaagaattgtatcttcacaaggttttaaacttataaggtaaatcataacagatggattaagtgcatgttaacc 46246350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 554
Target Start/End: Original strand, 24803076 - 24803135
Alignment:
Q  495 tctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggttga 554  Q
    ||||||| |||||||||||||||||||||  ||||| |||  ||||||| ||||||||||    
T  24803076 tctgttttatgttttgatcaaataaaaaacaaaaggatgaacttattttgatatggttga 24803135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 41074495 - 41074446
Alignment:
Q  181 aaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaat 230  Q
    |||||||||| |||||||| ||||||| ||||||||||||| || |||||    
T  41074495 aaagcaaaaagaattgtatcttcacatggttttaaagtcaaaatctaaat 41074446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 46021062 - 46021029
Alignment:
Q  3 ggtgaggttattttaatatggctgaaactgttaa 36  Q
    ||||||||||||||||||||||||||| ||||||    
T  46021062 ggtgaggttattttaatatggctgaaagtgttaa 46021029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 46028135 - 46028078
Alignment:
Q  104 taatagaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacata 161  Q
    ||||||||||||||||||| |||||| ||||  ||||||| || |||| |||||||||    
T  46028135 taatagaatgaaatgggctaaatttcacaagtatggcaaccatagcaaaataaacata 46028078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 14320645 - 14320569
Alignment:
Q  173 aaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagt 249  Q
    |||||||||||||||||  |||||||| ||||||| ||| || ||| || || |||||||| ||| ||||| |||||    
T  14320645 aaaacaggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcatgacaaatggatgaagt 14320569  T

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Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 202 - 310
Target Start/End: Original strand, 3804121 - 3804229
Alignment:
Q  202 tcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaattaatataactgcaaagaacatatcaatacaccatta 301  Q
    |||||| ||||||||||||| || |||||||||||||||||| ||||| |||||||||||||| |||  | |  ||||||||||||| |||||| ||| |    
T  3804121 tcacatggttttaaagtcaaaatttaaatcataacagatggatgaagtgcatgttaacccaaactaacttcatagcaaagaacatattaatacaacatca 3804220  T
Q  302 cagcattga 310  Q
    || ||||||    
T  3804221 caacattga 3804229  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 3801740 - 3801859
Alignment:
Q  178 aggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgtt--aacccaaattaatataact 275  Q
    ||||||||| ||| |||||| | ||||||| ||||||||||||| || |||||||||||||||||| ||| | ||||||  | |||||| |||| | |||    
T  3801740 aggaaagcataaagaattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgtttaaccccaaactaatttcact 3801839  T
Q  276 gcaaagaacatatcaataca 295  Q
    ||||||||| ||| ||||||    
T  3801840 gcaaagaacgtattaataca 3801859  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 480 - 550
Target Start/End: Complemental strand, 50667548 - 50667478
Alignment:
Q  480 tgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatgg 550  Q
    ||||||||||||| |||  |||| |||||||||||||||| |||| ||||||||||| |||||||| ||||    
T  50667548 tgctccttagcaacttcgatttattgttttgatcaaataagaaatcaaagggtgaggatattttaacatgg 50667478  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 479 - 535
Target Start/End: Original strand, 3801975 - 3802031
Alignment:
Q  479 atgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgag 535  Q
    |||||| ||||||||||||| |||||||||||||||||||| |||  ||||||||||    
T  3801975 atgctctttagcaaattctgattaatgttttgatcaaataagaaacaaaagggtgag 3802031  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 280
Target Start/End: Original strand, 3802212 - 3802327
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 263  Q
    ||||||||||||  |||||||||||| ||||||||  ||||||| ||||||||||| | || |||||||||||| ||| | ||| | ||| |||  ||||    
T  3802212 attttcataaaat-aggaaagcaaaactaattgtagcttcacatggttttaaagtcgaaatctaaatcataacatatgaaagaaatgcatattacgccaa 3802310  T
Q  264 attaatataactgcaaa 280  Q
    |||||| |||| |||||    
T  3802311 attaatttaaccgcaaa 3802327  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 50668681 - 50668628
Alignment:
Q  108 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacata 161  Q
    ||||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||||    
T  50668681 agaatgaaatgggctcaattttccaagtctgacaacaatagcaagataaacata 50668628  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 50668103 - 50668040
Alignment:
Q  186 aaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagt 249  Q
    ||||| |||||||| ||||||| ||| ||||||||| || |||||||| ||| |||||||||||    
T  50668103 aaaaaaaattgtatcttcacatggttctaaagtcaaaatttaaatcatgacatatggacgaagt 50668040  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 3802651 - 3802767
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 263  Q
    ||||||||||||  |||||| |||||  |||||||| |||||||  |||||||||||| || |||   |||||| ||||| ||||| |||| || |||||    
T  3802651 attttcataaaat-aggaaaacaaaacgaattgtatcttcacatgattttaaagtcaaaatctaa---ataacaaatggaagaagtgcatgctagcccaa 3802746  T
Q  264 attaatataactgcaaagaac 284  Q
    ||||||| |  ||||||||||    
T  3802747 attaatacatgtgcaaagaac 3802767  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 554
Target Start/End: Complemental strand, 20950031 - 20949981
Alignment:
Q  504 tgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggttga 554  Q
    ||||||||||||||||| ||  ||| ||||||| |||||||||||||||||    
T  20950031 tgttttgatcaaataaacaaccaaaaggtgaggatattttaatatggttga 20949981  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 554
Target Start/End: Complemental strand, 20951002 - 20950952
Alignment:
Q  504 tgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggttga 554  Q
    ||||||||||||||||| ||  ||| ||||||| |||||||||||||||||    
T  20951002 tgttttgatcaaataaacaaccaaaaggtgaggatattttaatatggttga 20950952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 480 - 554
Target Start/End: Complemental strand, 50668372 - 50668298
Alignment:
Q  480 tgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatggttga 554  Q
    |||| |||||||| || |||| | |||||||||||||||| |||  ||||||||||| | ||| |||||||||||    
T  50668372 tgctgcttagcaacttttgttcattgttttgatcaaataagaaaccaaagggtgaggatgtttcaatatggttga 50668298  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 547
Target Start/End: Original strand, 3803692 - 3803793
Alignment:
Q  446 cttagcaacttcatttttgtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaa 545  Q
    |||||||||||||||||||||  | ||| | | |  || | |||||||||||||||||||||||||  |||||| |||   ||||||||| ||| |||||    
T  3803692 cttagcaacttcatttttgttgttttttgagcgacacttcatagcaaattctgtttaatgttttgaagaaataagaaacagaagggtgagattaatttaa 3803791  T
Q  546 ta 547  Q
    ||    
T  3803792 ta 3803793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 25481831 - 25481889
Alignment:
Q  489 gcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 549  Q
    |||||||||||||| |||||||||||||||| |||   || ||||||| ||||||||||||    
T  25481831 gcaaattctgtttattgttttgatcaaataacaaa--caaaggtgaggatattttaatatg 25481889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 549
Target Start/End: Complemental strand, 25862204 - 25862146
Alignment:
Q  489 gcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 549  Q
    |||||||||||||| |||||||||||||||| |||   || ||||||| ||||||||||||    
T  25862204 gcaaattctgtttattgttttgatcaaataacaaa--caaaggtgaggatattttaatatg 25862146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 535
Target Start/End: Complemental strand, 50669651 - 50669602
Alignment:
Q  486 ttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgag 535  Q
    ||||||| ||||||||| |||||||||||||||| |||  ||||||||||    
T  50669651 ttagcaacttctgtttattgttttgatcaaataagaaaccaaagggtgag 50669602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 482 - 549
Target Start/End: Complemental strand, 25887947 - 25887882
Alignment:
Q  482 ctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 549  Q
    |||||| |||| ||||||||| |||||||||||||||| |||   || ||||||| ||||||||||||    
T  25887947 ctccttggcaagttctgtttattgttttgatcaaataacaaa--caaaggtgaggatattttaatatg 25887882  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 492 - 550
Target Start/End: Original strand, 4525565 - 4525623
Alignment:
Q  492 aattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatgg 550  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||    
T  4525565 aattctgtttaatgtttttatcaaataagaaatgaaagggtgaggttgttttaatatgg 4525623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 4522939 - 4523015
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatg 241  Q
    |||||||||||| |||||||||||||| |||||| | ||||||| ||||||||||||| || ||||||||||||||||    
T  4522939 attttcataaaa-caggaaagcaaaaagaattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatg 4523015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 489 - 550
Target Start/End: Original strand, 4522770 - 4522831
Alignment:
Q  489 gcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatgg 550  Q
    |||||||||||||||| |||||||||||||| |||  |||||||||| | ||||||||||||    
T  4522770 gcaaattctgtttaatattttgatcaaataagaaacaaaagggtgagatcattttaatatgg 4522831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 4525320 - 4525403
Alignment:
Q  173 aaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaa 258  Q
    |||||| ||||||||||| |||||| |  |||||| ||||||||||||| |  || ||||||||||||||| ||||| ||| ||||    
T  4525320 aaaacaagaaagcaaaaagaattgtct--tcacatggttttaaagtcaaaacctagatcataacagatggatgaagtgcattttaa 4525403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 7948 - 8026
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatgga 243  Q
    |||||||||||| || |||| |||||| |||||||| | |||| |||| ||||||||| ||||||||||||| |||||||    
T  7948 attttcataaaa-caagaaaacaaaaagaattgtatctacacaaagttctaaagtcaacatgtaaatcataagagatgga 8026  T

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Target: scaffold0384 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 5736 - 5812
Alignment:
Q  164 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatg 241  Q
    |||||||||||| || |||| |||||| |||||||| | |||| |||| ||||||||| ||||||||||||| |||||    
T  5736 attttcataaaa-caagaaaacaaaaagaattgtatctacacaaagttctaaagtcaacatgtaaatcataagagatg 5812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 269
Target Start/End: Original strand, 52806365 - 52806467
Alignment:
Q  167 ttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaatt 266  Q
    |||||||||||| ||||| ||||| ||||| || ||||||| ||| ||||||||| || |||||| | | ||||||| | | | || |||||||||| ||    
T  52806365 ttcataaaaacaagaaagaaaaaagaattgcatcttcacattgttctaaagtcaaaatctaaatcgtgaaagatggaaggaatgcaagttaacccaagtt 52806464  T
Q  267 aat 269  Q
    |||    
T  52806465 aat 52806467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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