View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0941_high_31 (Length: 404)

Name: NF0941_high_31
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0941_high_31
NF0941_high_31
[»] chr7 (4 HSPs)
chr7 (9-184)||(44017218-44017393)
chr7 (209-379)||(44017026-44017196)
chr7 (210-379)||(44011115-44011285)
chr7 (7-43)||(44017394-44017430)
[»] chr5 (2 HSPs)
chr5 (209-379)||(16093655-16093826)
chr5 (209-281)||(10627006-10627078)
[»] chr4 (6 HSPs)
chr4 (213-379)||(36771014-36771181)
chr4 (273-379)||(47566171-47566278)
chr4 (272-379)||(4557988-4558096)
chr4 (209-286)||(36769163-36769240)
chr4 (209-263)||(4557946-4558000)
chr4 (342-379)||(36769227-36769264)
[»] chr6 (4 HSPs)
chr6 (209-379)||(19702256-19702427)
chr6 (266-379)||(12166513-12166627)
chr6 (209-271)||(12168777-12168839)
chr6 (211-319)||(5166239-5166349)
[»] chr2 (2 HSPs)
chr2 (209-379)||(17627942-17628113)
chr2 (213-379)||(17673014-17673179)
[»] chr3 (1 HSPs)
chr3 (209-378)||(3329508-3329677)
[»] chr1 (1 HSPs)
chr1 (209-315)||(3091518-3091627)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 4e-85; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 44017393 - 44017218
Alignment:
Q  9 aatttctaggagttgatgtggtttcactaccacacccactttctcctacaatttatggccttcaatagagatagactacttttaaacaaacccacattcc 108  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  44017393 aatttctaggagttgatgtggtctcactacgacacccactttctcctacaattcatggccttcaatagagatagactactttcaaacaaacccacattcc 44017294  T
Q  109 aactttgacaaattgaagccaaaattcaaagtttgaatgtaaactgtatgatcttgatccaatatgcaactgtgtg 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44017293 aactttgacaaattgaagccaaaattcaaagtttgaatgtaaactgtatgatcttgatccaatatgcaactgtgtg 44017218  T

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Target: chr7; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 209 - 379
Target Start/End: Complemental strand, 44017196 - 44017026
Alignment:
Q  209 gttgaaaagtgactcaaaaatgtgcatcttttctgtcaaaatcggtggtcgatttgtaccacacggtggccgattttgactggttttggagaattttgtc 308  Q
    |||||||||||||||||||||||| ||||| || |||||||||| |||  ||||||||||||||||||| ||||||||| || |||||||||||||||||    
T  44017196 gttgaaaagtgactcaaaaatgtgtatcttgtcagtcaaaatcgatggcagatttgtaccacacggtggtcgattttgattgattttggagaattttgtc 44017097  T
Q  309 tcgtgaaaaattggtggccgattttgcaaacttggtggcctatttcgcgcaggaggagaaaaataaaacag 379  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44017096 tcgtgaaaaattggtggccgattttgcaaactcggtggcctatttcgcgcaggaggagaaaaataaaacag 44017026  T

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Target: chr7; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 210 - 379
Target Start/End: Complemental strand, 44011285 - 44011115
Alignment:
Q  210 ttgaaaagtgactcaaaaatgtgcatcttttctgtcaaaatcggtggtcgatttgtaccacacggtggccgattttgac-tggttttggagaattttgtc 308  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||||| |||||||||||||| |||||||||||||||| |||||||||||| |||||||    
T  44011285 ttgaaaagtgactcaaaaatgtgcatcctgtctgtcaaaatgggtggccgatttgtaccacatggtggccgattttgacctggttttggagacttttgtc 44011186  T
Q  309 tcgtgaaaaattggtggccgattttgcaaacttggtggcctatttcgcgcaggaggagaaaaataaaacag 379  Q
    ||||||||||||||| |||||||||||||||| ||||||| |||||||| |||||||||||||||||||||    
T  44011185 tcgtgaaaaattggtagccgattttgcaaactcggtggccgatttcgcgtaggaggagaaaaataaaacag 44011115  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 44017430 - 44017394
Alignment:
Q  7 gtaatttctaggagttgatgtggtttcactaccacac 43  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  44017430 gtaatttctaggagttgatgtggtctcactacgacac 44017394  T

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Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 209 - 379
Target Start/End: Complemental strand, 16093826 - 16093655
Alignment:
Q  209 gttgaaaagtgactcaaaaatgtgcatcttttctgtcaaaatcggtggtcgatttgtaccacacggtggccgattttga-ctggttttggagaattttgt 307  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  16093826 gttgaaaagtgactcaaaaatgtgcatcctgtctgtcaaaatcggtggccgatttgtaccacacggtggccgattttgatctggttttggagacttttgt 16093727  T
Q  308 ctcgtgaaaaattggtggccgattttgcaaacttggtggcctatttcgcgcaggaggagaaaaataaaacag 379  Q
    |||||||||||  |||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||    
T  16093726 ctcgtgaaaaaccggtggccgattttgcaaactcggtggccgatttcgctcaggaggagaaaaataaaacag 16093655  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 281
Target Start/End: Original strand, 10627006 - 10627078
Alignment:
Q  209 gttgaaaagtgactcaaaaatgtgcatcttttctgtcaaaatcggtggtcgatttgtaccacacggtggccga 281  Q
    |||||||||||||||||||||||| ||  | ||||||||| ||||||| ||| | || ||||| || ||||||    
T  10627006 gttgaaaagtgactcaaaaatgtgtattctgtctgtcaaattcggtggccgaatggttccacatgggggccga 10627078  T

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Target: chr4 (Bit Score: 116; Significance: 7e-59; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 213 - 379
Target Start/End: Original strand, 36771014 - 36771181
Alignment:
Q  213 aaaagtgactcaaaaatgtgcatcttttctgtcaaaatcggtggtcgatttgtaccacacggtggccgattttgac-tggttttggagaattttgtctcg 311  Q
    ||||||||||||||||||||||| || |||||||||||||||||  ||||||||||||| || ||||||||||||| |||||||||||| ||||||||||    
T  36771014 aaaagtgactcaaaaatgtgcattttgtctgtcaaaatcggtggctgatttgtaccacatgggggccgattttgacctggttttggagacttttgtctcg 36771113  T
Q  312 tgaaaaattggtggccgattttgcaaacttggtggcctatttcgcgcaggaggagaaaaataaaacag 379  Q
    |||||||| |||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  36771114 tgaaaaatcggtggccgattttgcaaacttggtggccgatttcgcataggaggagaaaaataaaacag 36771181  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 47566171 - 47566278
Alignment:
Q  273 ggtggccgattttgac-tggttttggagaattttgtctcgtgaaaaattggtggccgattttgcaaacttggtggcctatttcgcgcaggaggagaaaaa 371  Q
    ||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||  ||||||||||||||||    
T  47566171 ggtggtcgattttgacctggttttggagacttttgtctcgtgaaaaattggtggccgattttgcaaactcggtggccgatttgtcgcaggaggagaaaaa 47566270  T
Q  372 taaaacag 379  Q
    ||||||||    
T  47566271 taaaacag 47566278  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 272 - 379
Target Start/End: Original strand, 4557988 - 4558096
Alignment:
Q  272 cggtggccgattttgac-tggttttggagaattttgtctcgtgaaaaattggtggccgattttgcaaacttggtggcctatttcgcgcaggaggagaaaa 370  Q
    |||||||||||||| || |||||||||| | |||||||||||||||||| |||| ||||||||||| ||| ||||||| ||||  |||||||||||||||    
T  4557988 cggtggccgattttaacctggttttggacacttttgtctcgtgaaaaatcggtgtccgattttgcagactcggtggccgatttgtcgcaggaggagaaaa 4558087  T
Q  371 ataaaacag 379  Q
    | |||||||    
T  4558088 acaaaacag 4558096  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 36769163 - 36769240
Alignment:
Q  209 gttgaaaagtgactcaaaaatgtgcatcttttctgtcaaaatcggtggtcgatttgtaccacacggtggccgattttg 286  Q
    |||||||||||||| |||||||| |||  | |||||||||||||||||  ||||| ||||||||||||||||||||||    
T  36769163 gttgaaaagtgactaaaaaatgttcattctgtctgtcaaaatcggtggctgatttataccacacggtggccgattttg 36769240  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 4557946 - 4558000
Alignment:
Q  209 gttgaaaagtgactcaaaaatgtgcatcttttctgtcaaaatcggtggtcgattt 263  Q
    |||||||||||||||||| ||||||||  | ||||||||||||||||| ||||||    
T  4557946 gttgaaaagtgactcaaacatgtgcattctgtctgtcaaaatcggtggccgattt 4558000  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 36769227 - 36769264
Alignment:
Q  342 ggtggcctatttcgcgcaggaggagaaaaataaaacag 379  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  36769227 ggtggccgattttgcgcaggaggagaaaaataaaacag 36769264  T

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Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 209 - 379
Target Start/End: Complemental strand, 19702427 - 19702256
Alignment:
Q  209 gttgaaaagtgactcaaaaatgtgcatcttttctgtcaaaatcggtggtcgatttgtaccacacggtggccgattttgac-tggttttggagaattttgt 307  Q
    |||||||||||||||||| |||||||| || ||||||||| ||||||| ||||||||||||||||| ||| ||||||||| |||||||||||| ||||||    
T  19702427 gttgaaaagtgactcaaagatgtgcattttatctgtcaaagtcggtggccgatttgtaccacacgggggctgattttgacctggttttggagacttttgt 19702328  T
Q  308 ctcgtgaaaaattggtggccgattttgcaaacttggtggcctatttcgcgcaggaggagaaaaataaaacag 379  Q
    || ||||||||| |||||||||||||||||||| || |||||||||  ||||||||||||||||||||||||    
T  19702327 cttgtgaaaaatcggtggccgattttgcaaactcgggggcctatttttcgcaggaggagaaaaataaaacag 19702256  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 266 - 379
Target Start/End: Complemental strand, 12166627 - 12166513
Alignment:
Q  266 accacacggtggccgattttgac-tggttttggagaattttgtctcgtgaaaaattggtggccgattttgcaaacttggtggcctatttcgcgcaggagg 364  Q
    |||||||||||| |||||||||| |||||||||||| |||||||||||||||||| ||||||||||||| |||||||| ||||| ||||| |||| || |    
T  12166627 accacacggtggtcgattttgacctggttttggagacttttgtctcgtgaaaaatcggtggccgattttccaaacttgatggccgatttctcgcaagatg 12166528  T
Q  365 agaaaaataaaacag 379  Q
    |||||||||||||||    
T  12166527 agaaaaataaaacag 12166513  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 12168839 - 12168777
Alignment:
Q  209 gttgaaaagtgactcaaaaatgtgcatcttttctgtcaaaatcggtggtcgatttgtaccaca 271  Q
    |||||||||||||||||||||||||||| | ||||||||| ||||||  | ||||||||||||    
T  12168839 gttgaaaagtgactcaaaaatgtgcatcctgtctgtcaaattcggtgtccaatttgtaccaca 12168777  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 319
Target Start/End: Complemental strand, 5166349 - 5166239
Alignment:
Q  211 tgaaaagtgactcaaaaatg-tgcatcttttctgtcaaaatcggtggtcgatttgtaccacacggtggccgattttgac-tggttttggagaattttgtc 308  Q
    |||||||||||||||||||  ||||| || ||||||||| ||||||  ||| | || ||||||  ||||||| |||||| || ||||| |||||||||||    
T  5166349 tgaaaagtgactcaaaaataatgcattttgtctgtcaaattcggtgaccgagtggttccacacaatggccgaatttgacctgattttgaagaattttgtc 5166250  T
Q  309 tcgtgaaaaat 319  Q
    |||| ||||||    
T  5166249 tcgtaaaaaat 5166239  T

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Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 209 - 379
Target Start/End: Complemental strand, 17628113 - 17627942
Alignment:
Q  209 gttgaaaagtgactcaaaaatgtgcatcttttctgtcaaaatcggtggtcgatttgtaccacacggtggccgattttgac-tggttttggagaattttgt 307  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||| ||||||||||||||||  |||||||| |||| |||||||||| | ||||||    
T  17628113 gttgaaaagtgactcaaaaatgtgcattatatctgtcaaaatcggtggccgatttgtaccacacgaaggccgattctgacctggttttggatacttttgt 17628014  T
Q  308 ctcgtgaaaaattggtggccgattttgcaaacttggtggcctatttcgcgcaggaggagaaaaataaaacag 379  Q
    |||||||||||| |||||||||||||||||||||||||||  ||||  ||||||| ||||||||||||||||    
T  17628013 ctcgtgaaaaatcggtggccgattttgcaaacttggtggctgatttgtcgcaggacgagaaaaataaaacag 17627942  T

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Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 213 - 379
Target Start/End: Complemental strand, 17673179 - 17673014
Alignment:
Q  213 aaaagtgactcaaaaatgtgcatcttttctgtcaaaatcggtggtcgatttgtaccacacggtggccgattttgac-tggttttggagaattttgtctcg 311  Q
    |||||||||||||||||||||||  | ||||||||||||||||| ||||||||||||||  || |||||||||||| |||||||||| | ||||||||||    
T  17673179 aaaagtgactcaaaaatgtgcattatgtctgtcaaaatcggtggccgatttgtaccaca--gttgccgattttgacctggttttggatacttttgtctcg 17673082  T
Q  312 tgaaaaattggtggccgattttgcaaacttggtggcctatttcgcgcaggaggagaaaaataaaacag 379  Q
    |||||||| |||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||||||    
T  17673081 tgaaaaatcggtggccgattttgcaaacttggtggccgatttgtcgcaggacgagaaaaataaaacag 17673014  T

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Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 209 - 378
Target Start/End: Original strand, 3329508 - 3329677
Alignment:
Q  209 gttgaaaagtgactcaaaaatgtgcatcttttctgtcaaaatcggtggtcgatttgtaccacacggtggccgattttga-ctggttttggagaattttgt 307  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||  |||||||||||| |||||||||||||  ||||     
T  3329508 gttgaaaagtgactcaaaaatgtgcatcttgtctgtcaaaattggtggccgatttgtaccacacgacggccgattttgacctggttttggagacatttga 3329607  T
Q  308 ctcgtgaaaaattggtggccgattttgcaaacttggtggcctatttcgcgcaggaggagaaaaataaaaca 378  Q
    |||||||||||||||||| ||||||||||||| | ||| || |||| ||||||||||||||||||||||||    
T  3329608 ctcgtgaaaaattggtggtcgattttgcaaac-tcgtgaccgattttgcgcaggaggagaaaaataaaaca 3329677  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 315
Target Start/End: Complemental strand, 3091627 - 3091518
Alignment:
Q  209 gttgaaaagtgactcaaaaatgtgcatcttttctgtcaaaatcggtggtcgatttgtaccacacggtggccgattttgac---tggttttggagaatttt 305  Q
    |||||||||||||||| ||   |||||||| ||||||||||||| ||| ||| | || | |  |||||||||||||||||   |  ||||||||| ||||    
T  3091627 gttgaaaagtgactcagaataatgcatcttgtctgtcaaaatcgatggccgaatggttctatccggtggccgattttgacaagtttttttggagactttt 3091528  T
Q  306 gtctcgtgaa 315  Q
    ||||||||||    
T  3091527 gtctcgtgaa 3091518  T

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