View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0941_high_34 (Length: 394)

Name: NF0941_high_34
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0941_high_34
NF0941_high_34
[»] chr2 (1 HSPs)
chr2 (88-381)||(17470707-17471000)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 88 - 381
Target Start/End: Original strand, 17470707 - 17471000
Alignment:
Q  88 aacatgtaagaaaatacctcggttttctaggtacaacaatttcatacgcaaatcatcacctgccttagcaagagaaagagatgcctccccatgcaaaggc 187  Q
    |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  17470707 aacatgtaggaaagtacctcggttttccaggtacaacaatttcatacgcaaatcatcccctgccttagcaagagaaagagatgcctccccatgtaaaggc 17470806  T
Q  188 tcccttatctcagcttgctctaatatctctatacataatcgatcattcgaagaaacctttgcttcctcagtagatttataataatccacagctttcgtac 287  Q
    |||||| ||||||||||||| ||||||||||| || |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  17470807 tcccttctctcagcttgctccaatatctctatgcacaatcgatcattcgaagaaacttttccttcctcagtagatttataataatccacagctttcgtac 17470906  T
Q  288 aacgctttgaaatctgaagagcttttctgccatccatagtgagttcagaaggttgagctcccttcgttaacaaagatacaataatcttcggttc 381  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17470907 aacgttttgaaatctgaagagcttttctgccatccatagtgagttcagaaggttgagctcccttcgttaacaaagatacaataattttcggttc 17471000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University