View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0941_high_44 (Length: 327)
Name: NF0941_high_44
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 26120094 - 26120411
Alignment:
| Q |
1 |
catcccagggtcgtcgaagacatcgttgtaaccataagctgtcatgttatcatgaccatcactcatggactcaacatctgaatcacggtatagatgatca |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
26120094 |
catcccagggtcgttgaagacatcgttgtagccataagctgtcatgttattatgaccatcgctcatggactcaacatccgaatcacggtatagatgatca |
26120193 |
T |
|
| Q |
101 |
aaaggattctgcaaatatacaatgtcgatgtctgaaagaagaacactatatcccaactgcaaaaattctcttagaatacggaatttgagactggagacag |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26120194 |
aaaggattctgcaaatatacaatatcgatgtctgatagaagaacactgtatcccaactgcaaaaattctcttagaatacggaatttgagactggagacag |
26120293 |
T |
|
| Q |
201 |
cctcgccgtttgcaatttttccaacagtatcaataccattatccgggtctcttttataaaatgggacttgattcgattcacaaaactttgcaatctcatc |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26120294 |
cctcgccgtttggaatttttccaacagtatcaataccattatccgggtctcttttgtaaaatgggacttgattcgattcacaaaactttgcaatctcatc |
26120393 |
T |
|
| Q |
301 |
gtctaaggcaacagctag |
318 |
Q |
| |
|
||||||||||||| |||| |
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|
| T |
26120394 |
gtctaaggcaacaactag |
26120411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 26096807 - 26097124
Alignment:
| Q |
1 |
catcccagggtcgtcgaagacatcgttgtaaccataagctgtcatgttatcatgaccatcactcatggactcaacatctgaatcacggtatagatgatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096807 |
catcccagggtcgtcgaagacatcgttgtaaccataagctgtcatgttatcatgaccatcactcatggactcaacatctgaatcacggtatagatgatca |
26096906 |
T |
|
| Q |
101 |
aaaggattctgcaaatatacaatgtcgatgtctgaaagaagaacactatatcccaactgcaaaaattctcttagaatacggaatttgagactggagacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |
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| T |
26096907 |
aaaggattctgcaaatatacaatgtcgatgtctgaaagaagaacactatatcccaactgcaaaaattctcttagaatatgaaatttgagcgtggagacag |
26097006 |
T |
|
| Q |
201 |
cctcgccgtttgcaatttttccaacagtatcaataccattatccgggtctcttttataaaatgggacttgattcgattcacaaaactttgcaatctcatc |
300 |
Q |
| |
|
|| ||||||| | ||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26097007 |
ccgcgccgttgaccatttttccaacagtatcaaaaccattgtccgggtctctttggtaaaatgggactttattcgattcacaaaactttgcaatctcatc |
26097106 |
T |
|
| Q |
301 |
gtctaaggcaacagctag |
318 |
Q |
| |
|
||||||||||||| |||| |
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|
| T |
26097107 |
gtctaaggcaacaactag |
26097124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 26084532 - 26084849
Alignment:
| Q |
1 |
catcccagggtcgtcgaagacatcgttgtaaccataagctgtcatgttatcatgaccatcactcatggactcaacatctgaatcacggtatagatgatca |
100 |
Q |
| |
|
||||||| |||| | ||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
26084532 |
catcccatggtctttgaagacatcgttgtagccataagctgtcatgttattatgaccatcgctcatggactcaacatccgaatcacggtataaatgatca |
26084631 |
T |
|
| Q |
101 |
aaaggattctgcaaatatacaatgtcgatgtctgaaagaagaacactatatcccaactgcaaaaattctcttagaatacggaatttgagactggagacag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||| |
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|
| T |
26084632 |
aaaggattctgcaaatatacaatgtcgatgtctgatagaagaacactatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacag |
26084731 |
T |
|
| Q |
201 |
cctcgccgtttgcaatttttccaacagtatcaataccattatccgggtctcttttataaaatgggacttgattcgattcacaaaactttgcaatctcatc |
300 |
Q |
| |
|
|| | ||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||||||| |
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|
| T |
26084732 |
ccccaccgtttggaatttttccaacagtatcaatatcattatccgggtctctttggtaaaatgggactttattagattcacaaaattttgcaatctcatc |
26084831 |
T |
|
| Q |
301 |
gtctaaggcaacagctag |
318 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
26084832 |
gtctaaggcaacaactag |
26084849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 318
Target Start/End: Original strand, 26064828 - 26065124
Alignment:
| Q |
22 |
atcgttgtaaccataagctgtcatgttatcatgaccatcactcatggactcaacatctgaatcacggtatagatgatcaaaaggattctgcaaatataca |
121 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26064828 |
atcgttgtagccataagctgtcatgttattatgaccatcgctcatggactcaacatccgaatcacggtataaatgatcaaaaggattctgcaaatatata |
26064927 |
T |
|
| Q |
122 |
atgtcgatgtctgaaagaagaacactatatcccaactgcaaaaattctcttagaatacggaatttgagactggagacagcctcgccgtttgcaatttttc |
221 |
Q |
| |
|
|| ||| ||||||| |||||||| |||||||||| |||||||||||| ||||||||||| ||||| || | |||||||||| | ||| | |||||| |
|
|
| T |
26064928 |
atatcggtgtctgatagaagaacgctatatcccagctgcaaaaattcccttagaatacgaaatttaagcccggagacagccgttctctttcctctttttc |
26065027 |
T |
|
| Q |
222 |
caacagtatcaataccattatccgggtctcttttataaaatgggacttgattcgattcacaaaactttgcaatctcatcgtctaaggcaacagctag |
318 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26065028 |
caacagcatcaataccattatccgggtctcttttgtaaaatgggacttgattcaattcacaaaactttgcaatctcatcgtctaaggcaacaactag |
26065124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 26126761 - 26127063
Alignment:
| Q |
11 |
tcgtcgaagacatcgttgtaaccataagctgtcatgttatcatgaccatcactcatggactcaacatctgaatcacggtatagatgatcaaaaggattct |
110 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
26126761 |
tcgtcaaagacatcgttaaagccataagctgtcatgttatcatgaccatcgctcatggactctacatccgaatcacggtatagatgatcaaaaggattct |
26126860 |
T |
|
| Q |
111 |
gcaaatatacaatgtcgatgtctgaaagaagaacactatatcccaactgcaaaaattctcttagaatacggaatttgagactggagacagcctcgccgtt |
210 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||| || | ||||||||| | | |
|
|
| T |
26126861 |
gcaaatatacaatgtcgatgtctgatagaagaacgctatatcccaactgcaaaaattctcttaaaatacgaaatttaagcccagagacagccgctctccc |
26126960 |
T |
|
| Q |
211 |
tgcaatttttccaacagtatcaataccattatccgggtctcttttataaaatgggacttgattcgattcacaaaactttgcaatctcatcgtctaaggca |
310 |
Q |
| |
|
| | ||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||| ||| |||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
26126961 |
tcctatttttccaacagtatcaatagcatcatccgggtctcttttgtaaaacgggactttatttgattcacaaaactttgaaatttcatcgtctaaggca |
26127060 |
T |
|
| Q |
311 |
aca |
313 |
Q |
| |
|
||| |
|
|
| T |
26127061 |
aca |
26127063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 26036159 - 26036476
Alignment:
| Q |
1 |
catcccagggtcgtcgaagacatcgttgtaaccataagctgtcatgttatcatgaccatcactcatggactcaacatctgaatcacggtatagatgatca |
100 |
Q |
| |
|
|||| |||| ||||||||||||||||| || || |||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26036159 |
catcgcaggttcgtcgaagacatcgttatagccgtaagctgtcatgttattatggccatcactcatggactcgacatctgaatcacggtatagatgatca |
26036258 |
T |
|
| Q |
101 |
aaaggattctgcaaatatacaatgtcgatgtctgaaagaagaacactatatcccaactgcaaaaattctcttagaatacggaatttgagactggagacag |
200 |
Q |
| |
|
||||||||||| |||||||||||||| | |||||| | ||||||| ||||||||||||||||||||||||||||||||| ||||| || | |||||||| |
|
|
| T |
26036259 |
aaaggattctgtaaatatacaatgtcaacgtctgataagagaacaccatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacag |
26036358 |
T |
|
| Q |
201 |
cctcgccgtttgcaatttttccaacagtatcaataccattatccgggtctcttttataaaatgggacttgattcgattcacaaaactttgcaatctcatc |
300 |
Q |
| |
|
| | | | | |||||||| || |||||||||| ||| ||||||||||| ||||||||||||||||| | ||||||||| |||| ||||||||| |
|
|
| T |
26036359 |
catggttccctccttgttttccaatggtgtcaataccatcatctgggtctcttttgtaaaatgggacttgatttgtttcacaaaattttgaaatctcatc |
26036458 |
T |
|
| Q |
301 |
gtctaaggcaacagctag |
318 |
Q |
| |
|
|||||| |||||| |||| |
|
|
| T |
26036459 |
gtctaaagcaacaactag |
26036476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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