View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_high_46 (Length: 319)
Name: NF0941_high_46
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_high_46 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: scaffold0531 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 3267 - 3473
Alignment:
| Q |
18 |
gatgcacctccggtgaccatgtagacaatgttcactccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgt |
117 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3267 |
gatgcacctccggtgaccatgtaaacaatgttcaccccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgt |
3366 |
T |
|
| Q |
118 |
gttgtcccagttcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatgataa |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3367 |
gttgtcccagttcatggtacctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatgataa |
3466 |
T |
|
| Q |
218 |
gataagt |
224 |
Q |
| |
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||||||| |
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| T |
3467 |
gataagt |
3473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 8032081 - 8031859
Alignment:
| Q |
2 |
gtggaccttccgcaaagatgcacctccggtgaccatgtagacaatgttcactccaacttctactacaagttgttgaggcaccacaatataaaggcctaac |
101 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
8032081 |
gtggaacttccgcaatgatgcacctccggtgaccatgtagacaatgtcgcccccaacttctactataagttgttgaggaaccacaatataaaggcctaac |
8031982 |
T |
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| Q |
102 |
ttttcgccaaacgcgtgttgtcccagttcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagag |
201 |
Q |
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| T |
8031981 |
ttttcgccaaacgcatgttgacctaattcatggtatctatcaaaacgttttcccggaatcatttcatgcatctcaaccatttgccacaatgtatacagag |
8031882 |
T |
|
| Q |
202 |
tgatgatccatgataagataagt |
224 |
Q |
| |
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||||| |||||||||||| |||| |
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| T |
8031881 |
tgatggtccatgataagagaagt |
8031859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 7979324 - 7979508
Alignment:
| Q |
30 |
gtgaccatgtagacaatgttcactccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtcccagtt |
129 |
Q |
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|||||||| || |||||||| || |||| |||||| ||||||||||||||||||||||||||||| ||||| |||| ||||| || ||||| || | || |
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| T |
7979324 |
gtgaccatataaacaatgttaacaccaatttctaccacaagttgttgaggcaccacaatataaagacctaattttttcccaaaagcatgttgacctaatt |
7979423 |
T |
|
| Q |
130 |
catggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatga |
214 |
Q |
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| T |
7979424 |
catggtatctatcaaagcgttttcccggaaccatttcatgcatctcaaccatttgccaaagtgtgtagaatgtgatgatccatga |
7979508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 7971739 - 7971940
Alignment:
| Q |
13 |
gcaaagatgcacctccggtgaccatgtagacaatgttcactccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaa |
112 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| | || || | ||| |||||||||||||||| |||||| | | ||||||||||| ||||| |
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| T |
7971739 |
gcaatgatgcacctccggtgaccatgtagacaatgtccgacccgacctgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaa |
7971838 |
T |
|
| Q |
113 |
cgcgtgttgtcccagttcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccat |
212 |
Q |
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|| ||||| || | ||||| ||| |||||| ||||||||| |||||||| |||||||||||||||||||||||||| || ||||| |||||||||||| |
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| T |
7971839 |
agcatgttgccctaattcattatatgtatcaagacgttttcctggaaccatctcatgcatctcaaccatttgccacaaggtgtacagtgtgatgatccat |
7971938 |
T |
|
| Q |
213 |
ga |
214 |
Q |
| |
|
|| |
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|
| T |
7971939 |
ga |
7971940 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 8041949 - 8041748
Alignment:
| Q |
13 |
gcaaagatgcacctccggtgaccatgtagacaatgttcactccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaa |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| | || || | ||| |||||||||||||||| |||||| | | ||||||||||| ||||| |
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| T |
8041949 |
gcaatgatgcacctccggtgaccatgtagacaatgtccgacccgacctgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaa |
8041850 |
T |
|
| Q |
113 |
cgcgtgttgtcccagttcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccat |
212 |
Q |
| |
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|| ||||| || | ||||| ||| |||||| ||||||||| |||||||| |||||||||||||||||||||||||| || ||||| |||||||||||| |
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| T |
8041849 |
agcatgttgccctaattcattatatgtatcaagacgttttcctggaaccatctcatgcatctcaaccatttgccacaaggtgtacagtgtgatgatccat |
8041750 |
T |
|
| Q |
213 |
ga |
214 |
Q |
| |
|
|| |
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|
| T |
8041749 |
ga |
8041748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 41382138 - 41382349
Alignment:
| Q |
13 |
gcaaagatgcacctccggtgaccatgtagacaatgttcactccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaa |
112 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| ||| ||||||| ||| |||||||||||||||| |||||| | | ||||||||||| ||||| |
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| T |
41382138 |
gcaatgatgcacctccggtgaccatgtagacaatgtccaccccaacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaa |
41382237 |
T |
|
| Q |
113 |
cgcgtgttgtcccagttcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccat |
212 |
Q |
| |
|
||| ||||| |||| ||||| ||| |||||| ||||||||| |||||||| ||||||||||||||||||||||||| || || ||||||||||||||| |
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|
| T |
41382238 |
cgcatgttggcccaattcattatatgtatcaagacgttttcccggaaccatctcatgcatctcaaccatttgccacagggtgtagagagtgatgatccat |
41382337 |
T |
|
| Q |
213 |
gataagataagt |
224 |
Q |
| |
|
|| | ||||||| |
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|
| T |
41382338 |
gaaaggataagt |
41382349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 43853219 - 43853128
Alignment:
| Q |
129 |
tcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatgataagat |
220 |
Q |
| |
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|||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||| | || || || ||||| |||||||||||||| |
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|
| T |
43853219 |
tcatggtacctatcaaaccgttttcctggaaccatttcatgcatttcaaccatttgccatagagtgtagagggtgattatccatgataagat |
43853128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 14198715 - 14198878
Alignment:
| Q |
24 |
cctccggtgaccatgtagacaatgttcactccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtc |
123 |
Q |
| |
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|||||||| ||||||||||||||||| || || ||||| || | ||||||||| ||||| |||||||| || || |||||||| ||||| || | ||| | |
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| T |
14198715 |
cctccggttaccatgtagacaatgttaacgccgacttcaacaataagttgttgtggcacaacaatatacagacccaacttttcaccaaaagcatattgac |
14198814 |
T |
|
| Q |
124 |
ccagttcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgcca |
187 |
Q |
| |
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|||||||||| |||||||| |||||||| || || ||||||||||||||||||||||||||||| |
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|
| T |
14198815 |
ccagttcatgatatctatcgaaacgtttcccgggtaccatttcatgcatctcaaccatttgcca |
14198878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 38827416 - 38827453
Alignment:
| Q |
150 |
tttccaggaaccatttcatgcatctcaaccatttgcca |
187 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
38827416 |
tttccgggaactatttcatgcatctcaaccatttgcca |
38827453 |
T |
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