View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_high_57 (Length: 276)
Name: NF0941_high_57
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_high_57 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 53 - 276
Target Start/End: Original strand, 4150200 - 4150423
Alignment:
| Q |
53 |
aaattgagttatctactccaagtctccgtagctttgattttcagggtaatcctgttcagaaactcagtgggaacaataacaatctctcttctataaaaca |
152 |
Q |
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| T |
4150200 |
aaatcgagttatctactccaagtctccgtagctttgattttaagggtaatcctattcagaaactcagtgggaacaataacaatctctcttctatcaaaca |
4150299 |
T |
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| Q |
153 |
tgtaaaaattgatgtagcagtcccgtcatatatcgaaaaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtc |
252 |
Q |
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| T |
4150300 |
tgtaaaaattgatgtagcagtcccgtcatatatcgaaaaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtc |
4150399 |
T |
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| Q |
253 |
tcttcatctactcttgaggtactt |
276 |
Q |
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|||||||||| ||||||||||||| |
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| T |
4150400 |
tcttcatctattcttgaggtactt |
4150423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 53 - 276
Target Start/End: Original strand, 4165969 - 4166192
Alignment:
| Q |
53 |
aaattgagttatctactccaagtctccgtagctttgattttcagggtaatcctgttcagaaactcagtgggaacaataacaatctctcttctataaaaca |
152 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4165969 |
aaatcgagttatctactccaagtctccgtagctttgattttaagggtaatcctattcagaaactcagtgggaacaataacaatctctcttctatcaaaca |
4166068 |
T |
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| Q |
153 |
tgtaaaaattgatgtagcagtcccgtcatatatcgaaaaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtc |
252 |
Q |
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| T |
4166069 |
tgtaaaaattgatgtagcagtcccgtcatatatcgaaaaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtc |
4166168 |
T |
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| Q |
253 |
tcttcatctactcttgaggtactt |
276 |
Q |
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| T |
4166169 |
tcttcatctattcttgaggtactt |
4166192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 13485418 - 13485324
Alignment:
| Q |
62 |
tatctactccaagtctccgtagctttgattttcagggtaatcctgttcagaaactcagtgggaacaataacaatctctcttctataaaacatgta |
156 |
Q |
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| T |
13485418 |
tatctactccaagtctctgcacctttgattttcatggtattcctattcagaaactccatgggatcaagagcaatctctcttctatcaaacatgta |
13485324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 13490242 - 13490165
Alignment:
| Q |
199 |
ttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtactt |
276 |
Q |
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| T |
13490242 |
ttggttctgctcaactggctagttgagcttgctaatattgaatcattgactgtgtcttcaactactcttcaggtactt |
13490165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 777486 - 777419
Alignment:
| Q |
209 |
tcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtactt |
276 |
Q |
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| T |
777486 |
tcaattggctagttgagcttgctaatatcgaatcactgacagtgtcttcaaatactcttgaggtactt |
777419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 13490379 - 13490285
Alignment:
| Q |
62 |
tatctactccaagtctccgtagctttgattttcagggtaatcctgttcagaaactcagtgggaacaataacaatctctcttctataaaacatgta |
156 |
Q |
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| T |
13490379 |
tatctactccaagtctttgtacctttgagtttcatggtattcctattcagaaactccatcggagcaagagaaatctctcttctattaaacatgta |
13490285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 169
Target Start/End: Original strand, 32414267 - 32414368
Alignment:
| Q |
68 |
ctccaagtctccgtagctttgattttcagggtaatcctgttcagaaactcagtgggaacaataacaatctctcttctataaaacatgtaaaaattgatgt |
167 |
Q |
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| T |
32414267 |
ctccaagtctttgtagctttgattttaggggtattcctgttcagaaactctacgggagcaagagcaatctctcttctatcaaacatgtgaaaattgacgt |
32414366 |
T |
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| Q |
168 |
ag |
169 |
Q |
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|| |
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| T |
32414367 |
ag |
32414368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 14288376 - 14288277
Alignment:
| Q |
56 |
ttgagttatctactccaagtctccgtagctttgattttcagggtaatcctgttcagaaactcagtgggaacaataacaatctctcttctataaaacatgt |
155 |
Q |
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| T |
14288376 |
ttgagctatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaatcaatctctcttctatcaaacatgt |
14288277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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