View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_high_6 (Length: 569)
Name: NF0941_high_6
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 30 - 467
Target Start/End: Original strand, 28864270 - 28864707
Alignment:
| Q |
30 |
gagtggaggatcataacaggctgtgaccccaaaaatactagatggagttaccataatggaggatcttggccagttcttttatggcttctcaccgcggctt |
129 |
Q |
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| T |
28864270 |
gagtggaggatcataacaggctgtgaccccaaaaatactagatggagttaccataatggaggatcttggccagttcttttatggcttctcaccgcggctt |
28864369 |
T |
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| Q |
130 |
cgatcaagactggaagacagaagattgcagaatgcgcagttaaaattgctgagaccagattgctgaaggacaattggcctgaatattatgatggaaagct |
229 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28864370 |
cgatcaagactggaagacagaagattgcagaacacgcacttaaaattgctgagaccagattgctgaaggacaattggccctaatattatgatggaaagct |
28864469 |
T |
|
| Q |
230 |
aggtagatacattgggaagcaagctaggaaatgccaaacttggtctgttgctggttacttagttgctaagctgatgatggaggatccattacatttgcgt |
329 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28864470 |
aggtagatgtattgggaagcaagctaggaaatgccaaacttggtctgttgctggttacttagttgctaagctgatgatggaggatccattacatttgcgt |
28864569 |
T |
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| Q |
330 |
atggtggccttcgaggaagataaactcctaagtcctcaacacagaagatcaaaatcatgcccatggtgatgaggtaaatgcaatggaaaaagttcaagat |
429 |
Q |
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| T |
28864570 |
atggtggccttcgaggaagataaactcctaagtcctcaacacagaagatcaaaatcatgcccatggtgatgaggtaaatgcaatggaaaaagtgcaaggt |
28864669 |
T |
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| Q |
430 |
gaaacactgtaaatgaaacactgcaaagaattatctac |
467 |
Q |
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| T |
28864670 |
gaaacactgtaaatgaaacactgcaaagaattatctac |
28864707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 55111574 - 55111505
Alignment:
| Q |
33 |
tggaggatcataacaggctgtgaccccaaaaatactagatggagttaccataatggaggatcttggccag |
102 |
Q |
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| T |
55111574 |
tggaggatcataacaggatgtgacccaaaaaatactagatggagttaccacaatgggggatcttggccag |
55111505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 172 - 286
Target Start/End: Complemental strand, 55111013 - 55110899
Alignment:
| Q |
172 |
aaattgctgagaccagattgctgaaggacaattggcctgaatattatgatggaaagctaggtagatacattgggaagcaagctaggaaatgccaaacttg |
271 |
Q |
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| T |
55111013 |
aaattgccgaggccagactgctaaaagacaactggccggagtattatgatggaacacatggtcgatacattggaaagcaggctcgaaaatgccaaacctg |
55110914 |
T |
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| Q |
272 |
gtctgttgctggtta |
286 |
Q |
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|||| |||||||||| |
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| T |
55110913 |
gtctattgctggtta |
55110899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 43229995 - 43229941
Alignment:
| Q |
48 |
ggctgtgaccccaaaaatactagatggagttaccataatggaggatcttggccag |
102 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43229995 |
ggctgtgatcccaaaaataccagatggagttaccataatggaggatcttggccag |
43229941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 102
Target Start/End: Complemental strand, 43220887 - 43220857
Alignment:
| Q |
72 |
tggagttaccataatggaggatcttggccag |
102 |
Q |
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| T |
43220887 |
tggagttaccataatggaggatcttggccag |
43220857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 313
Target Start/End: Complemental strand, 43229488 - 43229379
Alignment:
| Q |
204 |
tggcctgaatattatgatggaaagctaggtagatacattgggaagcaagctaggaaatgccaaacttggtctgttgctggttacttagttgctaagctga |
303 |
Q |
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|||||||||||||||||||| || || || ||||| ||||||| || || || |||| |||||| |||||| |||| ||||| || || || ||| ||| |
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| T |
43229488 |
tggcctgaatattatgatggtaaacttggaagatatgttgggaaacaggcaagaaaataccaaacatggtctattgcgggttatttggtggcaaagatga |
43229389 |
T |
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| Q |
304 |
tgatggagga |
313 |
Q |
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| T |
43229388 |
tgctggagga |
43229379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 43220414 - 43220302
Alignment:
| Q |
204 |
tggcctgaatattatgatggaaagctaggtagatacattgggaagcaagctaggaaatgccaaacttggtctgttgctggttacttagttgctaagctga |
303 |
Q |
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|||||||||||||||||||| ||||| || ||||| |||| | |||| || |||| |||||| |||||| |||| ||||| | ||| ||||| ||| |
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| T |
43220414 |
tggcctgaatattatgatggtaagcttggaagatatgttggtagaaaagcaagaaaataccaaacatggtctattgcaggttatctggtttctaagatga |
43220315 |
T |
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| Q |
304 |
tgatggaggatcc |
316 |
Q |
| |
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|| |||||||||| |
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| T |
43220314 |
tgctggaggatcc |
43220302 |
T |
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