View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_10 (Length: 538)
Name: NF0941_low_10
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Original strand, 28089199 - 28089732
Alignment:
| Q |
1 |
ttgatacaattgcccttgcagccgattaattatcgaggctcgatttctagtttctagtaaccaggcttctcagcttttggt-cctataagaaataattac |
99 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28089199 |
ttgatacaattgcccttgcagccaattaattatcgaggctcgatttctagtttctagtaaccaggcttctcagcttttggttcctataagaaataattac |
28089298 |
T |
|
| Q |
100 |
taacaactactaattactagtattgtcatttaaagaaagctgagttttgatgagaaataaatctgaagtatcacttatgtatttcatctcatataaacaa |
199 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28089299 |
taacaactactaattactgttattgtcatttaaagaaagctgagttttgatgagaaataaatctgaagtatcacttatgtatttcatctcatataaacaa |
28089398 |
T |
|
| Q |
200 |
gtaaaagatatagtgtagagttttcatcatgaaacatgagatttaagttagtctagtctttgtccgtgttaaatatgatataaaatcatttttatagctt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28089399 |
gtaaaagatatagtgtagagttttcatcatgaaacatgagatttaagttagtctagtctttgtccgtgttaaatatgatataaaatcatttttatagctt |
28089498 |
T |
|
| Q |
300 |
aagctttttggattgttatttcatgagatggttgttagaatattttggtcttaaatatggtataagagcctttatgaccaagcggtctatagagttcaat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28089499 |
aagctttttggattgttatttcatgagatggttgttagaatattttggtcttaaatatggtataagagcctttatgaccaagcggtctatagagttcaat |
28089598 |
T |
|
| Q |
400 |
tcttaataacaaattggattacaattcaggtaggtagacctatacagtcagtgtccatgtttcaggcctaatttacttttgcatgaggccattttagaaa |
499 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28089599 |
tcttaataacaaattggattccaattcaggtaggtagacctatacagtcagtgtccatgtttcaggcctaatttacttttgcatgaggccattttagaaa |
28089698 |
T |
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| Q |
500 |
tatactgt--aaaatcttatgtatcttcatctca |
531 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |
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| T |
28089699 |
tatactgtaaaaaatcttatgtatcttcatctca |
28089732 |
T |
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