View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_104 (Length: 203)
Name: NF0941_low_104
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_104 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 17489117 - 17489227
Alignment:
| Q |
1 |
ctacccaattaattttgggaaaagggaagaagatgataaattactgcctttaaaatataataaaaataataagaagaagtgtatgctattgacttcactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17489117 |
ctacccaattaattttgggaaaagggaagaagatgataaattactgcctttaaaatataataaaaataataagaagaagtgtatgctattgacttcactt |
17489216 |
T |
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| Q |
101 |
aatcgttacct |
111 |
Q |
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||||||||||| |
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| T |
17489217 |
aatcgttacct |
17489227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 17564097 - 17563987
Alignment:
| Q |
1 |
ctacccaattaattttgggaaaagggaagaagatgataaattactgcctttaaaatataataaaaataataagaagaagtgtatgctattgacttcactt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17564097 |
ctacccaattaattttgggaaaagggaagaagatgataaattactgcctttaaaatataataaaaataataagaagaagtgtatgctattgacttcactt |
17563998 |
T |
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| Q |
101 |
aatcgttacct |
111 |
Q |
| |
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||||||||||| |
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| T |
17563997 |
aatcgttacct |
17563987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 1917303 - 1917413
Alignment:
| Q |
1 |
ctacccaattaattttgggaaaagggaagaagatgataaattactgcctttaaaatataataaaaataataagaagaagtgtatgctattgacttcactt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1917303 |
ctacccaattaattttgggaaaagggaagaagatgataaattactgcctttaaaatataataaaaataataataagaagtgtatgctattgacttcactt |
1917402 |
T |
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| Q |
101 |
aatcgttacct |
111 |
Q |
| |
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||||||||||| |
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| T |
1917403 |
aatcgttacct |
1917413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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