View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0941_low_11 (Length: 527)

Name: NF0941_low_11
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0941_low_11
NF0941_low_11
[»] chr2 (15 HSPs)
chr2 (30-218)||(14412593-14412773)
chr2 (390-454)||(14412899-14412963)
chr2 (281-344)||(14121885-14121948)
chr2 (283-357)||(25423821-25423895)
chr2 (280-366)||(42745097-42745183)
chr2 (295-368)||(18105342-18105414)
chr2 (280-357)||(37179991-37180068)
chr2 (280-336)||(12233086-12233142)
chr2 (283-366)||(31579210-31579293)
chr2 (281-355)||(7020352-7020426)
chr2 (280-357)||(5394470-5394547)
chr2 (280-361)||(9438122-9438203)
chr2 (280-368)||(17981572-17981659)
chr2 (294-366)||(37092176-37092248)
chr2 (283-362)||(13835442-13835521)
[»] chr5 (10 HSPs)
chr5 (280-357)||(10592001-10592078)
chr5 (280-366)||(5123479-5123565)
chr5 (280-335)||(18909313-18909368)
chr5 (280-362)||(29553613-29553695)
chr5 (280-336)||(36212970-36213026)
chr5 (283-366)||(25983742-25983825)
chr5 (295-357)||(22187988-22188050)
chr5 (280-357)||(30784976-30785053)
chr5 (280-357)||(31113408-31113485)
chr5 (280-337)||(32313116-32313173)
[»] chr3 (15 HSPs)
chr3 (280-368)||(20861322-20861410)
chr3 (280-366)||(27763795-27763881)
chr3 (280-359)||(30995953-30996032)
chr3 (280-366)||(22288309-22288395)
chr3 (295-366)||(8757433-8757504)
chr3 (280-366)||(25224773-25224859)
chr3 (282-357)||(48204301-48204376)
chr3 (294-368)||(44941244-44941317)
chr3 (280-357)||(38331202-38331279)
chr3 (281-357)||(55123172-55123248)
chr3 (283-357)||(43621301-43621376)
chr3 (280-366)||(22288595-22288681)
chr3 (283-357)||(23189516-23189590)
chr3 (283-360)||(1642683-1642760)
chr3 (294-335)||(15283159-15283200)
[»] chr6 (12 HSPs)
chr6 (283-368)||(28099320-28099405)
chr6 (280-368)||(12836876-12836964)
chr6 (280-360)||(31412196-31412276)
chr6 (280-368)||(12411222-12411310)
chr6 (310-368)||(9536871-9536929)
chr6 (281-325)||(28933213-28933257)
chr6 (295-333)||(423744-423782)
chr6 (288-346)||(21028843-21028901)
chr6 (288-346)||(21028980-21029038)
chr6 (280-360)||(1534326-1534404)
chr6 (280-349)||(25084108-25084177)
chr6 (281-349)||(24450007-24450075)
[»] chr1 (16 HSPs)
chr1 (280-366)||(36806685-36806771)
chr1 (280-357)||(15642529-15642606)
chr1 (280-366)||(42297423-42297509)
chr1 (280-365)||(9780971-9781056)
chr1 (280-336)||(12035624-12035680)
chr1 (281-349)||(46864166-46864234)
chr1 (312-357)||(18428132-18428177)
chr1 (280-357)||(44913183-44913260)
chr1 (302-357)||(16756178-16756233)
chr1 (280-363)||(22022194-22022277)
chr1 (280-357)||(28724746-28724823)
chr1 (280-324)||(11530670-11530714)
chr1 (280-324)||(36522259-36522303)
chr1 (281-343)||(2044472-2044534)
chr1 (289-338)||(15675895-15675944)
chr1 (280-344)||(17888216-17888280)
[»] chr4 (14 HSPs)
chr4 (280-366)||(31307047-31307133)
chr4 (280-357)||(9012344-9012421)
chr4 (280-357)||(14854679-14854756)
chr4 (280-357)||(38766163-38766240)
chr4 (283-366)||(35972420-35972503)
chr4 (280-357)||(33529331-33529408)
chr4 (280-352)||(13948587-13948659)
chr4 (296-368)||(35334077-35334149)
chr4 (280-358)||(17135170-17135248)
chr4 (283-357)||(51626296-51626370)
chr4 (280-357)||(46016223-46016300)
chr4 (280-337)||(38844178-38844235)
chr4 (292-336)||(25768699-25768743)
chr4 (280-368)||(45994596-45994684)
[»] chr8 (15 HSPs)
chr8 (280-357)||(4125014-4125091)
chr8 (280-357)||(7839243-7839320)
chr8 (280-366)||(13468726-13468812)
chr8 (280-366)||(2744007-2744093)
chr8 (280-358)||(30055990-30056068)
chr8 (280-344)||(36994503-36994567)
chr8 (280-355)||(12958077-12958152)
chr8 (280-353)||(19715719-19715793)
chr8 (283-335)||(21032373-21032425)
chr8 (280-352)||(30936078-30936150)
chr8 (306-357)||(39086852-39086903)
chr8 (299-333)||(8521791-8521825)
chr8 (280-338)||(15683003-15683061)
chr8 (294-336)||(24988587-24988629)
chr8 (312-366)||(40320202-40320256)
[»] chr7 (14 HSPs)
chr7 (280-366)||(29059879-29059965)
chr7 (280-366)||(31492177-31492263)
chr7 (294-366)||(11486725-11486797)
chr7 (281-368)||(35707921-35708008)
chr7 (312-366)||(28665196-28665250)
chr7 (282-344)||(29428795-29428857)
chr7 (300-357)||(21747030-21747087)
chr7 (280-357)||(37339723-37339800)
chr7 (283-338)||(23933660-23933715)
chr7 (314-357)||(36821070-36821113)
chr7 (280-357)||(19477242-19477316)
chr7 (283-357)||(42741799-42741872)
chr7 (280-353)||(24172283-24172356)
chr7 (280-336)||(8839292-8839348)
[»] scaffold0182 (1 HSPs)
scaffold0182 (280-366)||(26405-26491)
[»] scaffold0009 (1 HSPs)
scaffold0009 (280-357)||(27215-27292)


Alignment Details
Target: chr2 (Bit Score: 118; Significance: 6e-60; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 14412593 - 14412773
Alignment:
Q  30 cataagattgagtgagcatcccaaagaatagacaaaagggaaaaataggatttaatcaattagaaaagacgggcgttatataaagctcaagtgatttgat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     |||||||||||||     ||||    
T  14412593 cataagattgagtgagcatcccaaagaatagacaaaagggaaaaataggatttaatcaatttgaaaagacggg---attataaagctcaag-----tgat 14412684  T
Q  130 ttgaaccaagagataagaagttggagaaatgaaagnnnnnnncacaccacataatcaattaaaaaagatgggcgttgtaatactaacaa 218  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||    
T  14412685 ttgaaccaagagataagaagttggagaaatgaaagaaaaaaacacaccacataatcaattaaaaaagacgggcgttgtaatactaacaa 14412773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 390 - 454
Target Start/End: Original strand, 14412899 - 14412963
Alignment:
Q  390 caattattaaaaaagaactccagcaccaatattcttgttttatagtttaatgctaatacctatga 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14412899 caattattaaaaaagaactccagcaccaatattcttgttttatagtttaatgctaatacctatga 14412963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 281 - 344
Target Start/End: Complemental strand, 14121948 - 14121885
Alignment:
Q  281 tcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttg 344  Q
    |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| || |||||    
T  14121948 tcttagagagaacttgccgcccatttgagtcccacaatgctcgagggattagtctatgaagttg 14121885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 25423821 - 25423895
Alignment:
Q  283 ttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||||  ||||||||||||| || ||||||||||||||||||||||||| | ||||| ||| ||||||||    
T  25423821 ttagggagaacctgccgcccatttgggtcccacaatgctcgagggattagtctcagcagttgcgcgtggaggata 25423895  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 366
Target Start/End: Complemental strand, 42745183 - 42745097
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    |||||||||||| | ||| ||| ||||| ||||||||||| |||||||||||||||| | ||||| |||||||||||| || |||||    
T  42745183 ctcttagggagagtctgctgcctatttgggttccacaatggtcgagggattagtctcagcagttgcgcgcggaggatacccggttta 42745097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 18105414 - 18105342
Alignment:
Q  295 tgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagtttata 368  Q
    ||||||||||||||||  |||||| ||||||||||||||||| | ||||| ||||||||||||||| |||||||    
T  18105414 tgccgcccatttgagtctcacaatactcgagggattagtctc-gcagttgcgcgcggaggatatccggtttata 18105342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 37180068 - 37179991
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    |||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||  | | ||| ||||||||||||    
T  37180068 ctcttagggagagtgtgccgcccatttgagtcccacaatactcgagggattagtctacgcacttgcgcgcggaggata 37179991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 12233142 - 12233086
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctc 336  Q
    ||||||| |||| |||||||||||||| |||| ||||||||||||||||||||||||    
T  12233142 ctcttagagagagtttgccgcccatttaagtttcacaatgctcgagggattagtctc 12233086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 31579293 - 31579210
Alignment:
Q  283 ttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    ||||||||| | |||||||||||| ||| ||||||||||||||| |||||| || | ||||| |||||||||||| || |||||    
T  31579293 ttagggagagtctgccgcccatttaagtcccacaatgctcgaggaattagtttccgcagttgcgcgcggaggatacccggttta 31579210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 281 - 355
Target Start/End: Complemental strand, 7020426 - 7020352
Alignment:
Q  281 tcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggagga 355  Q
    |||||||||||| |||||||||||||| || | |||||||||||| ||||||||||   ||||| ||||||||||    
T  7020426 tcttagggagaacttgccgcccatttgggtcctacaatgctcgagtgattagtctcgacagttgcgcgcggagga 7020352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 5394470 - 5394547
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||||||   ||||||||||||| || |||||||||||| |||||||||||| | |||||  |||||||||||    
T  5394470 ctcttagggagagcctgccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgcacgcggaggata 5394547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 9438203 - 9438122
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatcca 361  Q
    |||||||| ||||  ||||||||||||| || |||||||||| ||||||||||| ||   ||||| ||||||||||||||||    
T  9438203 ctcttaggaagaacctgccgcccatttgtgtcccacaatgcttgagggattagtttccacagttgcgcgcggaggatatcca 9438122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 17981572 - 17981659
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagtttata 368  Q
    ||||||||||||  |||||||  ||||| || |||||||||||||| |||||||||| | ||||| |||||||||||| || |||||||    
T  17981572 ctcttagggagagcttgccgca-atttgggtcccacaatgctcgagagattagtctccgcagttgcgcgcggaggatacccggtttata 17981659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 366
Target Start/End: Complemental strand, 37092248 - 37092176
Alignment:
Q  294 ttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    |||||| ||||||| || ||||| ||||||||||||||||||| | |||||||| ||||||||| || |||||    
T  37092248 ttgccgtccatttgggtcccacagtgctcgagggattagtctccgcagttgtgcacggaggatacccggttta 37092176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 13835521 - 13835442
Alignment:
Q  283 ttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccag 362  Q
    |||||||||  ||||||  ||||||||| |||||||| | ||||||||||| |||| ||||||| | |||||||| ||||    
T  13835521 ttagggagagcttgccgttcatttgagtcccacaatgtttgagggattagtttctgcagttgtgtgtggaggatacccag 13835442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 10592001 - 10592078
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    |||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||    
T  10592001 ctcttagggagagtctgccgcccatttgagtcccacaatgctcgagggattagtctctgcagttgcgcgcggaggata 10592078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 366
Target Start/End: Complemental strand, 5123565 - 5123479
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    ||||||||||||   ||||||||||||| || ||||||||||||||||||||||||| | ||||| |||||||||||| || |||||    
T  5123565 ctcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccctgttta 5123479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 18909368 - 18909313
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtct 335  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  18909368 ctcttagggagaatttgccgctcatttgaatcccacaatgctcgagggattagtct 18909313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 362
Target Start/End: Original strand, 29553613 - 29553695
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccag 362  Q
    |||||||||||| |||| || ||||||| || ||| ||||||| || |||||||||||| ||||||||| |||||||| ||||    
T  29553613 ctcttagggagagtttgtcgtccatttgggtcccagaatgctcaagagattagtctctgcagttgtgcgtggaggatacccag 29553695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 36212970 - 36213026
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctc 336  Q
    |||||||||||| ||||||||||||||  || ||||||||||||||||||| |||||    
T  36212970 ctcttagggagagtttgccgcccatttaggtcccacaatgctcgagggattggtctc 36213026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 366
Target Start/End: Original strand, 25983742 - 25983825
Alignment:
Q  283 ttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    |||||||||  ||||||||||||||||| ||| |||| ||||| |||||||||| | |||||  | ||||||||| || |||||    
T  25983742 ttagggagagcttgccgcccatttgagtcccataatgttcgagtgattagtctccgcagttgcacacggaggatacccggttta 25983825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 357
Target Start/End: Complemental strand, 22188050 - 22187988
Alignment:
Q  295 tgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||| ||||| || ||||||| || |||||||||||||| | ||||| ||||||||||||    
T  22188050 tgccgcctatttgggtcccacaatactagagggattagtctccgcagttgcgcgcggaggata 22187988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 30785053 - 30784976
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    |||||||||||||| ||||  ||||||  ||  ||||||| || ||||||||||||| | ||||| ||||||||||||    
T  30785053 ctcttagggagaatctgccatccatttaggtctcacaatgttcaagggattagtctccgcagttgcgcgcggaggata 30784976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 31113408 - 31113485
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||||||   | |||||||||||  | ||||||| ||||||||||||||||| | ||||| ||||| ||||||    
T  31113408 ctcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcgaaggata 31113485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 32313173 - 32313116
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctct 337  Q
    |||||| ||||| ||||| |||||||| ||| | ||||| ||||||||||||||||||    
T  32313173 ctcttaaggagagtttgctgcccatttaagtcctacaatactcgagggattagtctct 32313116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 20861322 - 20861410
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagtttata 368  Q
    ||||||||||||   ||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||||||||| ||||||||||    
T  20861322 ctcttagggagagcctgccgcccatttgggttccataatgctcgagggattagtctccgcagttgtgcgcggaggatacccagtttata 20861410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 27763795 - 27763881
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    |||||||||||| | ||||| |||||||||| ||||||||||||||||||||||||| | ||||| |||| |||||||||| |||||    
T  27763795 ctcttagggagagtctgccgtccatttgagtcccacaatgctcgagggattagtctccgcagttgcgcgcagaggatatccggttta 27763881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 280 - 359
Target Start/End: Complemental strand, 30996032 - 30995953
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatc 359  Q
    |||||||||||| | |||||||||| || || ||||||||||||||||||||||||| | ||||| ||||||||||||||    
T  30996032 ctcttagggagagtctgccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatatc 30995953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 22288309 - 22288395
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    ||||||||||||| ||| || ||||||||||| |||||| ||| ||| ||||||||||| |||||||||||||||||| || |||||    
T  22288309 ctcttagggagaacttgtcgtccatttgagttacacaatactcaaggaattagtctctgcagttgtgcgcggaggatacccggttta 22288395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 366
Target Start/End: Original strand, 8757433 - 8757504
Alignment:
Q  295 tgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    ||||||| ||||| || ||||||||||||||||||||||||| | ||||| |||||||||||| || |||||    
T  8757433 tgccgcctatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggttta 8757504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 25224773 - 25224859
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    |||||| |||||| |||||||||||||  || ||||||||||| ||||||||||||| | |||||  ||||||||||| || |||||    
T  25224773 ctcttaaggagaacttgccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgcacgcggaggatacccggttta 25224859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 48204376 - 48204301
Alignment:
Q  282 cttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||||  ||| || ||||||| |||||||||||||| |||||||||| || | ||||| ||||||||||||    
T  48204376 cttagggagagcttgtcgtccatttgggttccacaatgctcaagggattagtttccgcagttgcgcgcggaggata 48204301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 44941317 - 44941244
Alignment:
Q  294 ttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagtttata 368  Q
    ||||||||||||||  | |||  |||||||||| ||||||||| | ||||| |||||||||||||||||||||||    
T  44941317 ttgccgcccatttggatcccattatgctcgagg-attagtctccgcagttgcgcgcggaggatatccagtttata 44941244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 38331202 - 38331279
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||| ||||  |||||||||||||| || |||||||| | |||||||||||||| | |||||  |||||||||||    
T  38331202 ctcttagagagagcttgccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgcacgcggaggata 38331279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 357
Target Start/End: Original strand, 55123172 - 55123248
Alignment:
Q  281 tcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    |||||||||||  ||||  |||||||| ||  |||||||||||||||||||||||  | ||||| ||||||||||||    
T  55123172 tcttagggagagcttgctacccatttgggtctcacaatgctcgagggattagtcttcgcagttgcgcgcggaggata 55123248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 43621376 - 43621301
Alignment:
Q  283 ttagggagaatttgccgcccatttgagttccacaa-tgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    |||||||||  ||||| ||||||| |||  ||||| ||||||||||||||||||||| ||||| |||| |||||||    
T  43621376 ttagggagagcttgcctcccatttaagtctcacaaatgctcgagggattagtctctgtagttgcgcgcagaggata 43621301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 22288595 - 22288681
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    ||||||| ||||| ||| ||  |||||||||| | |||| |||||   ||||||||||| |||||||||||||||||| || |||||    
T  22288595 ctcttagtgagaacttgtcgtacatttgagttactcaatactcgacaaattagtctctgcagttgtgcgcggaggatacccggttta 22288681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 23189590 - 23189516
Alignment:
Q  283 ttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    |||||| || |||||||| |||||||||  ||||| | ||||| |||||||||||  ||||||||||| ||||||    
T  23189590 ttagggtgagtttgccgctcatttgagtctcacaaggttcgagagattagtctctatagttgtgcgcgaaggata 23189516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 360
Target Start/End: Original strand, 1642683 - 1642760
Alignment:
Q  283 ttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatcc 360  Q
    ||||||||| | | ||| ||||||| || ||||||| || ||||||||||| || | ||||| |||||||||||||||    
T  1642683 ttagggagagtctaccgtccatttgggtcccacaatacttgagggattagtttccgcagttgcgcgcggaggatatcc 1642760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 15283159 - 15283200
Alignment:
Q  294 ttgccgcccatttgagttccacaatgctcgagggattagtct 335  Q
    |||||||||||||| || |||||||||||||| |||||||||    
T  15283159 ttgccgcccatttgggtcccacaatgctcgagagattagtct 15283200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 283 - 368
Target Start/End: Original strand, 28099320 - 28099405
Alignment:
Q  283 ttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagtttata 368  Q
    |||||||||||||| || |||||||||||||| ||||||||||||||||||||| | ||||| | |||||||||| ||||||||||    
T  28099320 ttagggagaatttgtcgtccatttgagttccataatgctcgagggattagtctccgcagttgcgagcggaggatacccagtttata 28099405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 12836964 - 12836876
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagtttata 368  Q
    ||||||||||||  | |||||||||||| || |||||||||| ||||||||||||||   ||||| |||||||||||| || |||||||    
T  12836964 ctcttagggagagctcgccgcccatttgggtcccacaatgcttgagggattagtctccccagttgcgcgcggaggatacccggtttata 12836876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 31412196 - 31412276
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatcc 360  Q
    |||||||||||| | ||||||||||||| |||||||||||||||||  |||||||||   ||||| || ||||||||||||    
T  31412196 ctcttagggagagtctgccgcccatttgggttccacaatgctcgagaaattagtctccacagttgcgcacggaggatatcc 31412276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 12411222 - 12411310
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagtttata 368  Q
    |||||||| ||| | |||||||||||| ||| |||||||||| ||||||||||||||   ||||| |||||| ||||| || |||||||    
T  12411222 ctcttaggaagagtctgccgcccatttaagtcccacaatgcttgagggattagtctccacagttgcgcgcgggggatacccggtttata 12411310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 9536871 - 9536929
Alignment:
Q  310 ttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagtttata 368  Q
    ||||||||||||||||||||||||||| | ||||| || ||||||||||| | ||||||    
T  9536871 ttccacaatgctcgagggattagtctccgcagttgcgctcggaggatatcaaatttata 9536929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 28933213 - 28933257
Alignment:
Q  281 tcttagggagaatttgccgcccatttgagttccacaatgctcgag 325  Q
    |||||| |||| ||||||||||||||| |||||||||||||||||    
T  28933213 tcttagagagagtttgccgcccatttgggttccacaatgctcgag 28933257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 333
Target Start/End: Original strand, 423744 - 423782
Alignment:
Q  295 tgccgcccatttgagttccacaatgctcgagggattagt 333  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  423744 tgccgtccatttgagtcccacaatgctcgagggattagt 423782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 21028901 - 21028843
Alignment:
Q  288 gagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtg 346  Q
    |||| ||||||||||||||| || |||||| |||| ||||||||||||| | |||||||    
T  21028901 gagagtttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttgtg 21028843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 21029038 - 21028980
Alignment:
Q  288 gagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtg 346  Q
    |||| ||||||||||||||| || |||||| |||| ||||||||||||| | |||||||    
T  21029038 gagagtttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttgtg 21028980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 1534326 - 1534404
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatcc 360  Q
    ||||||||||||  ||| |||||||||||||  |||||||||||||| |||  |||| | |||  ||||||||||||||||    
T  1534326 ctcttagggagagcttgtcgcccatttgagtcgcacaatgctcgaggaattgatctccgcagt--tgcgcggaggatatcc 1534404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 25084108 - 25084177
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgc 349  Q
    ||||||||||||  ||| |  |||||| |||||||||||||||||| ||||||||| || |||| |||||    
T  25084108 ctcttagggagagcttgtcatccatttaagttccacaatgctcgagagattagtctatgcagttatgcgc 25084177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 24450007 - 24450075
Alignment:
Q  281 tcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgc 349  Q
    ||||| ||||| |||||| ||||||||||||||| ||  || ||| ||||||||| |||||||| ||||    
T  24450007 tcttaaggagagtttgccacccatttgagttccataagacttgagagattagtctttggagttgcgcgc 24450075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 36806685 - 36806771
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    |||||||||||  | ||||||||||||| |||||||||||||||||||||||||||||| |||||  ||||||||||| || |||||    
T  36806685 ctcttagggagtgtctgccgcccatttgggttccacaatgctcgagggattagtctctgcagttgcacgcggaggatacccggttta 36806771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 15642529 - 15642606
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    |||||||||||| ||||||||||||||| || |||||||||||||| ||||| |||| | ||||| ||||||||||||    
T  15642529 ctcttagggagagtttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgcgcgcggaggata 15642606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 366
Target Start/End: Complemental strand, 42297509 - 42297423
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    |||||||||||| | ||||| ||||||| ||  |||||||||||||||||||||||| | ||||| |||||||||||| | ||||||    
T  42297509 ctcttagggagagtctgccgtccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctagttta 42297423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 365
Target Start/End: Complemental strand, 9781056 - 9780971
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttt 365  Q
    |||||||||||| |  |||||||||||| || |||||||||||||||||||||| || | ||||| |||||||| ||| |||||||    
T  9781056 ctcttagggagagtcggccgcccatttgggtcccacaatgctcgagggattagtatccgtagttgggcgcggagaatacccagttt 9780971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 12035624 - 12035680
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctc 336  Q
    |||||||||||| | ||||||||||||| || |||||||||||||||||||||||||    
T  12035624 ctcttagggagagtctgccgcccatttgggtcccacaatgctcgagggattagtctc 12035680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 46864166 - 46864234
Alignment:
Q  281 tcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgc 349  Q
    |||||||||||| |||||| ||||||| ||| ||||||| |||||||||||||||||| ||||| ||||    
T  46864166 tcttagggagaacttgccgtccatttgggtttcacaatgttcgagggattagtctctgcagttgcgcgc 46864234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 18428177 - 18428132
Alignment:
Q  312 ccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||    
T  18428177 ccacaatgctcgagggattagtctctgcagttgcgcgcggaggata 18428132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 44913183 - 44913260
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||||||  ||||||||||| || || |||||||||||||| |||||||||||| ||||  |||| |||||||    
T  44913183 ctcttagggagagcttgccgcccatctgggtcccacaatgctcgagagattagtctctgcagttacgcgcagaggata 44913260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 357
Target Start/End: Original strand, 16756178 - 16756233
Alignment:
Q  302 catttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    |||||| || ||||||||||||||||||||||||| | ||||| ||||||||||||    
T  16756178 catttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 16756233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 22022194 - 22022277
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagt 363  Q
    ||||||||||||| ||||| |||||||| || |||||||  |||||||||||||||| | |||||  || |||||||| |||||    
T  22022194 ctcttagggagaacttgccacccatttgggtcccacaatattcgagggattagtctccgcagttgcacgtggaggatacccagt 22022277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 28724746 - 28724823
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    |||||||| ||| | ||||| |||||||||| | |||||| |||||||||||||||| | | ||| ||||||||||||    
T  28724746 ctcttaggaagagtctgccgtccatttgagtcctacaatgttcgagggattagtctccgcaattgcgcgcggaggata 28724823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 11530670 - 11530714
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcga 324  Q
    |||||| ||||| ||||||| ||||||||||||||||||||||||    
T  11530670 ctcttaaggagagtttgccgtccatttgagttccacaatgctcga 11530714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 36522303 - 36522259
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcga 324  Q
    |||||||||||| ||||||| |||||||||| |||||||||||||    
T  36522303 ctcttagggagagtttgccgtccatttgagtcccacaatgctcga 36522259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 343
Target Start/End: Original strand, 2044472 - 2044534
Alignment:
Q  281 tcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagtt 343  Q
    |||||||||||  || ||||| ||||| |||||||||||||| || |||||||||||| ||||    
T  2044472 tcttagggagagattaccgcctatttgggttccacaatgctcaagagattagtctctgcagtt 2044534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 15675895 - 15675944
Alignment:
Q  289 agaatttgccgcccatttgagttccacaatgctcgagggattagtctctg 338  Q
    |||||||||||||||||| | ||| ||||| |||||| ||||||||||||    
T  15675895 agaatttgccgcccatttaatttctacaatactcgagagattagtctctg 15675944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 17888216 - 17888280
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttg 344  Q
    |||||||  ||| ||||||||| |||||||| ||| |||| ||||| |||||||||||| |||||    
T  17888216 ctcttagtaagagtttgccgccaatttgagtcccaaaatgatcgagtgattagtctctgtagttg 17888280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 366
Target Start/End: Complemental strand, 31307133 - 31307047
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    ||||||||||||   ||||||||||||| || ||||||||||||||||||||||||| | ||||| |||||||||||| || |||||    
T  31307133 ctcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggttta 31307047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 9012344 - 9012421
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||||||  |||||||||| ||| || ||||||||||||||||||||||||| | ||||| ||||||||||||    
T  9012344 ctcttagggagagcttgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 9012421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 14854679 - 14854756
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||||||  |||||||||||||| || | ||||| ||||||||||||||||||| ||||| ||||||||||||    
T  14854679 ctcttagggagagcttgccgcccatttgggtccaacaattctcgagggattagtctctgcagttgcgcgcggaggata 14854756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 38766163 - 38766240
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    |||||||||||| | ||||||||||||| ||  |||||||||||||||||||||||| | ||||| ||||||||||||    
T  38766163 ctcttagggagagtctgccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggata 38766240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 366
Target Start/End: Original strand, 35972420 - 35972503
Alignment:
Q  283 ttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    ||||||||| ||||||||||||||| || |||| ||| |||||||||||||||| | ||||| | |||||||||| | ||||||    
T  35972420 ttagggagagtttgccgcccatttgggtcccactatgttcgagggattagtctccgcagttgcgtgcggaggatacctagttta 35972503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 33529331 - 33529408
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||||||  |||||||||||||| || ||||||| || |||||||||||||| | ||||| || |||||||||    
T  33529331 ctcttagggagagcttgccgcccatttgggtcccacaatactggagggattagtctccgcagttgcgcacggaggata 33529408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 352
Target Start/End: Complemental strand, 13948659 - 13948587
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcgga 352  Q
    |||||||||||| | | ||| |||||||| |  |||||||||||||||||||||||||| ||||| |||||||    
T  13948659 ctcttagggagagtctaccgtccatttgaatctcacaatgctcgagggattagtctctgcagttgcgcgcgga 13948587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 368
Target Start/End: Complemental strand, 35334149 - 35334077
Alignment:
Q  296 gccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagtttata 368  Q
    |||||||||||| || ||||||| ||||||||||||||||| | ||||| ||| | ||||||||| |||||||    
T  35334149 gccgcccatttgggtcccacaatactcgagggattagtctccgcagttgcgcgtgaaggatatccggtttata 35334077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 358
Target Start/End: Original strand, 17135170 - 17135248
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatat 358  Q
    |||||||||||| |||||||| ||||||||| ||| ||  |||||||||||||||||   ||||| || ||||||||||    
T  17135170 ctcttagggagagtttgccgcgcatttgagtcccagaagactcgagggattagtctcaaaagttgcgcacggaggatat 17135248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 51626370 - 51626296
Alignment:
Q  283 ttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||| | ||||| ||||||| || ||||| |||||||| |||||||||| | ||||| ||||||||||||    
T  51626370 ttagggagagtctgccgtccatttgggtcccacagtgctcgagagattagtctccgcagttgcgcgcggaggata 51626296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 46016223 - 46016300
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||||||   ||||||||||||| || ||||||||||||| | ||||||||| | ||||| ||| ||||||||    
T  46016223 ctcttagggagagcctgccgcccatttgggtcccacaatgctcgaagaattagtctccgtagttgcgcgtggaggata 46016300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 38844235 - 38844178
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctct 337  Q
    |||||||| ||| | ||||||||||||||   |||||||||||||| |||||||||||    
T  38844235 ctcttaggaagagtctgccgcccatttgacccccacaatgctcgagagattagtctct 38844178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 25768743 - 25768699
Alignment:
Q  292 atttgccgcccatttgagttccacaatgctcgagggattagtctc 336  Q
    |||||||||||||||| || |||||||||| || |||||||||||    
T  25768743 atttgccgcccatttgggtgccacaatgcttgaaggattagtctc 25768699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 45994596 - 45994684
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagtttata 368  Q
    ||||||||||||   || |||||||||| ||  ||||||||||||| |||||||||| | |||||  |||  |||||| ||||||||||    
T  45994596 ctcttagggagagcctgacgcccatttgggtctcacaatgctcgagagattagtctccgcagttgcacgccaaggatacccagtttata 45994684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 4125091 - 4125014
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||||||   ||||||||||||| || ||||||||||||||||||||||||| | ||||| ||||||||||||    
T  4125091 ctcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 4125014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 7839320 - 7839243
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||||||   ||||||||||||| || ||||||||||||||||||||||||| | ||||| ||||||||||||    
T  7839320 ctcttagggagagcatgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 7839243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 366
Target Start/End: Complemental strand, 13468812 - 13468726
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    ||||||| |||| | |||||||||||||||| ||||||||||||| ||||||||||| | ||||| || ||||||||| || |||||    
T  13468812 ctcttagagagagtctgccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttgcgcacggaggatacccggttta 13468726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 2744007 - 2744093
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    ||||||||||||   || || ||||||| || ||||||||||||||||||||||||| | ||||| |||||||||||| || |||||    
T  2744007 ctcttagggagagcatgtcgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggttta 2744093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 358
Target Start/End: Complemental strand, 30056068 - 30055990
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatat 358  Q
    ||||||||||||   ||||| ||||||| |||||||||||||||||||||||||||||  ||||| | |||| ||||||    
T  30056068 ctcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctctttagttgcgtgcgggggatat 30055990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 36994567 - 36994503
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttg 344  Q
    |||||| ||||| ||||| ||||||||| || |||||| |||||||||||||||||||| |||||    
T  36994567 ctcttaaggagagtttgctgcccatttgggtcccacaaggctcgagggattagtctctgcagttg 36994503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 12958152 - 12958077
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggagga 355  Q
    ||||||||||||   || |||||||||| || ||||||||||||||||||||||||| | ||| | ||||||||||    
T  12958152 ctcttagggagagcctgtcgcccatttgggtcccacaatgctcgagggattagtctccgcagtagcgcgcggagga 12958077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 19715793 - 19715719
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcga-gggattagtctctggagttgtgcgcggag 353  Q
    |||| |||||||  |||||||||||||| || ||||||||||||| |||||||||||| | ||||| ||||||||    
T  19715793 ctctcagggagagcttgccgcccatttgggtcccacaatgctcgaggggattagtctccgcagttgcgcgcggag 19715719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 21032373 - 21032425
Alignment:
Q  283 ttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtct 335  Q
    ||||||||| ||||||||  |||||||| | ||||||||||||||||||||||    
T  21032373 ttagggagagtttgccgcttatttgagtactacaatgctcgagggattagtct 21032425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 30936078 - 30936150
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcgga 352  Q
    ||||||||||||   ||||||||||||| || | |||||| |||||||||||||||| | ||||| |||||||    
T  30936078 ctcttagggagagcctgccgcccatttgggtccgacaatgttcgagggattagtctccgcagttgcgcgcgga 30936150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 39086852 - 39086903
Alignment:
Q  306 tgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||| ||||||||||||||||||||||||| | |||||  |||||||||||    
T  39086852 tgagtcccacaatgctcgagggattagtctccgcagttgcacgcggaggata 39086903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 8521791 - 8521825
Alignment:
Q  299 gcccatttgagttccacaatgctcgagggattagt 333  Q
    |||||||||||| ||||||||||||||||||||||    
T  8521791 gcccatttgagtcccacaatgctcgagggattagt 8521825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 15683003 - 15683061
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctg 338  Q
    ||||||||||||   ||||||||||||  || |||||||||||||||||||| ||||||    
T  15683003 ctcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattaatctctg 15683061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 336
Target Start/End: Original strand, 24988587 - 24988629
Alignment:
Q  294 ttgccgcccatttgagttccacaatgctcgagggattagtctc 336  Q
    ||||||| ||||||||| ||||||| |||||||||||||||||    
T  24988587 ttgccgctcatttgagtcccacaatactcgagggattagtctc 24988629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 40320202 - 40320256
Alignment:
Q  312 ccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    |||| ||||||||| |||||||||||| |||||| ||||||||||| ||| ||||    
T  40320202 ccacgatgctcgagagattagtctctgtagttgtacgcggaggatacccaattta 40320256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 29059879 - 29059965
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    ||||||||||||   ||||||||||||| || |||||||||| |||||||||||||| | ||||| |||||||||||| || |||||    
T  29059879 ctcttagggagagcctgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggatacccggttta 29059965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 31492177 - 31492263
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    ||||||||||||   ||||||||||||  || ||||||||||||||||||||||||| | ||||| |||||||||||| || |||||    
T  31492177 ctcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggttta 31492263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 294 - 366
Target Start/End: Complemental strand, 11486797 - 11486725
Alignment:
Q  294 ttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    |||||||||||||| |||||||||||||| || |||||||||||  ||||| |||||||||||| || |||||    
T  11486797 ttgccgcccatttgggttccacaatgctcaagagattagtctctacagttgcgcgcggaggatacccggttta 11486725  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 368
Target Start/End: Original strand, 35707921 - 35708008
Alignment:
Q  281 tcttagggagaatttgccgcccatttgagttcc-acaatgctcgagggattagtctctggagttgtgcgcggaggatatccagtttata 368  Q
    |||||||||||| ||||| ||||||| || ||| ||||||||||||||||||||||||| ||||| ||| |||||||| || |||||||    
T  35707921 tcttagggagaacttgcctcccattt-agatcctacaatgctcgagggattagtctctgcagttgcgcgtggaggatacccggtttata 35708008  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 28665196 - 28665250
Alignment:
Q  312 ccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    ||||||||||||||||||||||||| | |||||  ||||||||||| ||||||||    
T  28665196 ccacaatgctcgagggattagtctccgcagttgcacgcggaggatacccagttta 28665250  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 29428857 - 29428795
Alignment:
Q  282 cttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttg 344  Q
    |||||||||| ||||||| |||||||  | |||||||| |||||||||||||||||| |||||    
T  29428857 cttagggagagtttgccgaccatttggatcccacaatgttcgagggattagtctctgcagttg 29428795  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 300 - 357
Target Start/End: Complemental strand, 21747087 - 21747030
Alignment:
Q  300 cccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    |||||||| || ||||||| ||||||||||||||||  | ||||||||||||||||||    
T  21747087 cccatttgggtcccacaatcctcgagggattagtcttcgcagttgtgcgcggaggata 21747030  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 37339800 - 37339723
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||| |||| | ||||||| ||||| || ||| ||||||||||||||||||||| | ||||| || |||||||||    
T  37339800 ctcttagtgagagtctgccgcctatttgggtcccataatgctcgagggattagtctccgcagttgcgcacggaggata 37339723  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 338
Target Start/End: Complemental strand, 23933715 - 23933660
Alignment:
Q  283 ttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctg 338  Q
    ||||||||| ||||||||||||||  |||| ||||| || ||||||||||||||||    
T  23933715 ttagggagagtttgccgcccatttaggttcgacaatacttgagggattagtctctg 23933660  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 36821113 - 36821070
Alignment:
Q  314 acaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||||||||||||||||||| ||||| |||| |||||||    
T  36821113 acaatgctcgagggattagtctctgcagttgcgcgcagaggata 36821070  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 19477316 - 19477242
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||||||  |||||| ||||||| || |||||||||| |||||||||||||| | |||  |||||||||||||    
T  19477316 ctcttagggagagcttgccggccatttgggtcccacaatgct-gagggattagtctccgcagt--tgcgcggaggata 19477242  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 42741872 - 42741799
Alignment:
Q  283 ttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||||  |||| |||||||| || ||| ||| |||||||||||| |||||| ||||| ||||||||||||    
T  42741872 ttagggagaacctgccacccatttgggt-ccataatactcgagggattaatctctgcagttgcgcgcggaggata 42741799  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 24172283 - 24172356
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggag 353  Q
    ||||||| ||||  |||||||||| |||  | ||||||||||||| |||||||||| || ||||| ||||||||    
T  24172283 ctcttagtgagagcttgccgcccacttggatcccacaatgctcgaaggattagtctatgcagttgcgcgcggag 24172356  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 8839348 - 8839292
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctc 336  Q
    |||||||||||||| ||||||| ||||   | ||||||| |||||||||||||||||    
T  8839348 ctcttagggagaatctgccgcctatttagatcccacaatactcgagggattagtctc 8839292  T

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Target: scaffold0182 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 26405 - 26491
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggatatccagttta 366  Q
    ||||||||||||   ||||||||||||| || |||||||| ||||| |||||||||| | ||||| |||||||||||| || |||||    
T  26405 ctcttagggagagcctgccgcccatttgggtcccacaatgttcgagagattagtctccgcagttgcgcgcggaggatacccggttta 26491  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 27292 - 27215
Alignment:
Q  280 ctcttagggagaatttgccgcccatttgagttccacaatgctcgagggattagtctctggagttgtgcgcggaggata 357  Q
    ||||||||||||  ||||||||||||||  |  ||| |||||||||||||||||||  | ||||| ||||||||||||    
T  27292 ctcttagggagagcttgccgcccatttggatctcacgatgctcgagggattagtcttcgcagttgcgcgcggaggata 27215  T

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