View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0941_low_12 (Length: 526)

Name: NF0941_low_12
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0941_low_12
NF0941_low_12
[»] chr1 (3 HSPs)
chr1 (81-516)||(1492953-1493388)
chr1 (268-399)||(1487313-1487442)
chr1 (30-70)||(46424154-46424194)
[»] chr4 (3 HSPs)
chr4 (30-70)||(9452967-9453007)
chr4 (399-470)||(39800538-39800609)
chr4 (404-464)||(53053585-53053645)


Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 81 - 516
Target Start/End: Original strand, 1492953 - 1493388
Alignment:
Q  81 tgtcagatattctcaaagttcacaacactttttcaatcagcaatttggcttgtagtgtagttattttccttctattgtttcttctgtatatttaaatact 180  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  1492953 tgtcagatattctcaaagttcacaacactttttcaatcagcattttggcttgtagtgtagttattttccttctattgtttcctgtgtatatttaaatact 1493052  T
Q  181 aagcatgcaatcaccaaactgagcctaatatttcagacactatagaacnnnnnnnnnnnnnnnntccaagaaatgggttctctcagcttcctcaccttcc 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |                ||||||||||||||||||||||||||||||||||||    
T  1493053 aagcatgcaatcaccaaactgagcctaatatttcagacactatagaccaaaaacaaaaaaaaaatccaagaaatgggttctctcagcttcctcaccttcc 1493152  T
Q  281 ttgttaacctgtttcttttgcagctcataactaattgtcatgcaacaaaacttagagttgattattacagaaacacttgtccaaatgttgaatcaatagt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1493153 ttgttaacctgtttcttttgcagctcataactaattgtcatgcaacaaaacttagagttgattattacagaaacacttgtccaaatgttgaatcaatagt 1493252  T
Q  381 aaaaaatgcagttgagatgaaacttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgttcaggtcagtgttcta 480  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1493253 caaaaatgcagttgagatgaaacttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgttcaggtcagtgttcaa 1493352  T
Q  481 tgtttttggaattagcagtgtcgacgtgtatctgtg 516  Q
    ||||||||||||||||||||||||||||||||||||    
T  1493353 tgtttttggaattagcagtgtcgacgtgtatctgtg 1493388  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 268 - 399
Target Start/End: Original strand, 1487313 - 1487442
Alignment:
Q  268 ttcctcaccttccttgttaacctgtttcttttgcagctcataactaattgtcatgcaacaaaacttagagttgattattacagaaacacttgtccaaatg 367  Q
    |||||||||||||||||||| |||||||| || |||||  ||| ||||||||  ||| |||||||||| ||||| |||||||||||||| ||| || ||     
T  1487313 ttcctcaccttccttgttaatctgtttctcttacagcttgtaaataattgtc--gcatcaaaacttagtgttgactattacagaaacacatgttcatatt 1487410  T
Q  368 ttgaatcaatagtaaaaaatgcagttgagatg 399  Q
    |||||||||| ||  ||||| ||||| |||||    
T  1487411 ttgaatcaatggtccaaaatacagttaagatg 1487442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 46424154 - 46424194
Alignment:
Q  30 tatatttaatgaattcaccgcttcatcttaaaagagcaaca 70  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  46424154 tatatttaatgaattcatcgcttcatcttaaaagagcaaca 46424194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 9452967 - 9453007
Alignment:
Q  30 tatatttaatgaattcaccgcttcatcttaaaagagcaaca 70  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  9452967 tatatttaatgaatttaccgcttcatcttaaaagagcaaca 9453007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 470
Target Start/End: Original strand, 39800538 - 39800609
Alignment:
Q  399 gaaacttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgttcaggt 470  Q
    |||| |||| ||||| |||||||| |  |||||||| ||| | |||||||| ||||||||||||||||||||    
T  39800538 gaaatttcaacaaacttttgttactgttcctgctacccttcgtctcttctttcatgattgttttgttcaggt 39800609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 464
Target Start/End: Original strand, 53053585 - 53053645
Alignment:
Q  404 ttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgt 464  Q
    |||| ||||||||||| || || ||||| || ||||| || ||||||||||||||||||||    
T  53053585 ttcaacaaacatttgtcactgctcctgccactcttagacttttcttccatgattgttttgt 53053645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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