View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_20 (Length: 481)
Name: NF0941_low_20
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 143 - 452
Target Start/End: Complemental strand, 9617944 - 9617638
Alignment:
| Q |
143 |
ataataaaagagcatgcatcatatgatatatcttattacctcgagtacacttagatgttgcacattagaaactgctctgagtggaattacctcgaataaa |
242 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9617944 |
ataataaaagagcatgcataatatgatatatcttattacctcgagtacacttagatgttgcacattagaaactgctctgagtggaa---cctcgaataaa |
9617848 |
T |
|
| Q |
243 |
tgaatactagctttgatcaacttcggtaggggtttagagtaccctcctccagctgtaatgtttccggcacttgctgctttaacatatgaaattgtcaaat |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
9617847 |
tgaatactagctttgatcaacttcggtaggggtttagagtaccctcctccagctataatgcttccggcactttctgctttaacatatgaaattgtcaaat |
9617748 |
T |
|
| Q |
343 |
tctctaatatgggacacccatagataagtttcttgaaatcctccatatcatcgaaacgaacatccatcagatccagggtcttaagtaaaggaagatgaac |
442 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| |
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| T |
9617747 |
tctctaatatgggacacccatagataagtttatttaaatcctccatatcatcgaaacggacattcatcatatccagggtcttaagtaaaggaagatgaac |
9617648 |
T |
|
| Q |
443 |
agagcaatga |
452 |
Q |
| |
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||| |||||| |
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| T |
9617647 |
agaacaatga |
9617638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 9618905 - 9618754
Alignment:
| Q |
1 |
ccaatatagtcgaagtacggttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttcaatgggatgagttttccccatctgcaaaaat |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
9618905 |
ccaatatagtcgaagtactgttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttcaatgggatgagttttccacaactgcaaaaat |
9618806 |
T |
|
| Q |
101 |
acaaacaaaatcaaataatagcttgttaagcaaaatagatgtataataaaag |
152 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9618805 |
acaaacaaaatcaaataatagcttgttaagcaaaatagatgtataataaaag |
9618754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 13712283 - 13712334
Alignment:
| Q |
19 |
ggttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttca |
70 |
Q |
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| T |
13712283 |
ggttaagttttcaaacacaggaaagcctttgtaatatgaattgatttcttca |
13712334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 390
Target Start/End: Complemental strand, 19805838 - 19805768
Alignment:
| Q |
320 |
tttaacatatgaaattgtcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatat |
390 |
Q |
| |
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| T |
19805838 |
tttaacatatctagttttcaaattctccaatatgggacacccagaaagaagtttcatgaaatcctcgatat |
19805768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 19806859 - 19806782
Alignment:
| Q |
20 |
gttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttcaatgggatgagttttccccatctgcaaa |
97 |
Q |
| |
|
||||||||||||||||||| || | | |||||||| |||||||||||||| ||| | || || || ||||||||||| |
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| T |
19806859 |
gttaagttttcaaacacggaaaagcctttgtaatataaattgatttcttcattggcaagatttgtctccatctgcaaa |
19806782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 19969676 - 19969752
Alignment:
| Q |
19 |
ggttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttcaatgggatgagttttccccatctgca |
95 |
Q |
| |
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|||||||||| ||||||| |||| ||| |||||||||||||||||||| || | ||| || | | ||||||||||| |
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| T |
19969676 |
ggttaagtttccaaacactggaaagtctttgtaatatgaattgatttctgcattaggaagactatgccccatctgca |
19969752 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 324 - 445
Target Start/End: Original strand, 32242700 - 32242821
Alignment:
| Q |
324 |
acatatgaaattgtcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatatcatcgaaacgaacatccatcagatccagggtct |
423 |
Q |
| |
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||||||| |||| |||||| |||||| |||||||||||| | ||||||||||| ||||| ||||||||||| ||| ||||||| |||| || || || | |
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| T |
32242700 |
acatatgcaattttcaaatcctctaacatgggacacccagatataagtttctttaaatcttccatatcatccaaatgaacatcaatcatatgtagtgttt |
32242799 |
T |
|
| Q |
424 |
taagtaaaggaagatgaacaga |
445 |
Q |
| |
|
||||| |||||||||||||||| |
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| T |
32242800 |
taagtgaaggaagatgaacaga |
32242821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 337 - 452
Target Start/End: Complemental strand, 32225949 - 32225833
Alignment:
| Q |
337 |
tcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatatcat-cgaaacgaacatccatcagatccagggtcttaagtaaaggaa |
435 |
Q |
| |
|
|||||| ||||||||||||||||||| | ||||||||||| |||||||| |||| || | ||||||||| | ||||||| | || ||||||||||||| |
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| T |
32225949 |
tcaaatcctctaatatgggacacccagatataagtttctttaaatcctcgatataatccaaaacgaacaacaatcagatgtaacgttttaagtaaaggaa |
32225850 |
T |
|
| Q |
436 |
gatgaacagagcaatga |
452 |
Q |
| |
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|||||||||| |||||| |
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| T |
32225849 |
gatgaacagaacaatga |
32225833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 200 - 452
Target Start/End: Original strand, 32225231 - 32225477
Alignment:
| Q |
200 |
ttgcacattagaaactgctctgagtggaattacctcgaataaatgaatactagctttgatcaacttcggtaggggtttagagtaccctcctccagctgta |
299 |
Q |
| |
|
|||||||||||||||| ||||||| |||| | ||||||||| | ||| ||||||| |||||||| | || ||||||||||||| |||||||||||| |
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| T |
32225231 |
ttgcacattagaaactactctgagcggaa---catcgaataaacggatattagctttaatcaacttggataagggtttagagtac---cctccagctgta |
32225324 |
T |
|
| Q |
300 |
a---tgtttccggcacttgctgctttaacatatgaaattgtcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatatcatcga |
396 |
Q |
| |
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| | ||| |||||| || | |||||||| || |||||| ||||||||||||| || || | ||||||||||| |||||||| |||||||| | |
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| T |
32225325 |
aactcgaccccgacacttgatg---tgacatatgatgttttcaaatcctctaatatgggaaactcagatataagtttctttaaatcctcgatatcatcca |
32225421 |
T |
|
| Q |
397 |
aacgaacatccatcagatccagggtcttaagtaaaggaagatgaacagagcaatga |
452 |
Q |
| |
|
|| |||| || ||||||| | | ||||||||||||||||||| ||| |||||| |
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|
| T |
32225422 |
aatgaacgtcaatcagatgtaactttttaagtaaaggaagatgaaaagaacaatga |
32225477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 24890902 - 24890844
Alignment:
| Q |
12 |
gaagtacggttaagttttcaaacacgggaatgtcaatgtaatatgaattgatttcttca |
70 |
Q |
| |
|
||||| ||||||||||||||||||| |||| | ||||||||||||||||||||||| |
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|
| T |
24890902 |
gaagttcggttaagttttcaaacacaggaaaacctttgtaatatgaattgatttcttca |
24890844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 450
Target Start/End: Original strand, 16259105 - 16259231
Alignment:
| Q |
324 |
acatatgaaattgtcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatatcatcgaaacgaacatccatcagatccagggtct |
423 |
Q |
| |
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||||||| | || |||||| |||||| ||||||| ||| | ||||||||||| |||||||| |||||||| ||||||||||| |||||| || || | |
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|
| T |
16259105 |
acatatgcagttttcaaatcctctaacatgggactcccggatataagtttctttaaatcctcgatatcatcaaaacgaacatcgctcagatgaagcgttt |
16259204 |
T |
|
| Q |
424 |
taagtaaaggaagatgaacagagcaat |
450 |
Q |
| |
|
|||||||||||||||||||||| |||| |
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|
| T |
16259205 |
taagtaaaggaagatgaacagaacaat |
16259231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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