View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_22 (Length: 475)
Name: NF0941_low_22
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 227 - 426
Target Start/End: Original strand, 24273292 - 24273491
Alignment:
| Q |
227 |
ctaagattgatgaagaggaagccgccttgattctgttagtttcattaccattgtcatatgagaactttagggagtctttcattagtggtaaagattcatt |
326 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24273292 |
ctaagattgatgaagaggaagctgccttgattttgttagtttcattacgattgtcatatgagaactttagggagtctttcattagtggtaaagattcatt |
24273391 |
T |
|
| Q |
327 |
gtttctggaagaagttaggtatgctcttcaaagtagagaacgacgacataactgtagtgacacttttttggatagttagactattgggttagtagtaaac |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
24273392 |
gtttctggaagaagttaggtatgctcttcaaagtagagaacgacgacataactgtagtgacactatcttggatagttagactattgggttagtagtaaac |
24273491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 98 - 232
Target Start/End: Original strand, 24272952 - 24273086
Alignment:
| Q |
98 |
aataacaaactggtatcaagagctggttcggatttctttgaaagtcgacaagttcactggaacgtatttgttggaaagaacatctagatcaattgaattc |
197 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |
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| T |
24272952 |
aataacaaactggtatcaagagcaagttcggatttgtttgaaagtcgacaagttcactggaaggtatttcctggaaagaacatctagaacaattgaattc |
24273051 |
T |
|
| Q |
198 |
aatattattagatcggcgtaatgttcatactaaga |
232 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
24273052 |
aatattattagatcgatgtaatgttcatactaaga |
24273086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 174 - 399
Target Start/End: Complemental strand, 20289597 - 20289372
Alignment:
| Q |
174 |
agaacatctagatcaattgaattcaatattattagatcggcgtaatgttcatactaagattgatgaagaggaagccgccttgattctgttagtttcatta |
273 |
Q |
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|||||||||||||||||||||||| |||||||| |||| || |||| || ||| |||||||||||| ||||| | |||||||||||||||||||| ||| |
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| T |
20289597 |
agaacatctagatcaattgaattcgatattatttgatctgcataatattgatattaagattgatgatgaggatgttgccttgattctgttagtttcttta |
20289498 |
T |
|
| Q |
274 |
ccattgtcatatgagaactttagggagtctttcattagtggtaaagattcattgtttctggaagaagttaggtatgctcttcaaagtagagaacgacgac |
373 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||||||||||| ||||| | ||||||| |||| |
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| T |
20289497 |
ccattgtcctatgagaactttagggagtctttcattagtggtaaaaattcactgtatgtggaagaagttaggtatgcccttcatattagagaattgcgac |
20289398 |
T |
|
| Q |
374 |
ataactgtagtgacacttttttggat |
399 |
Q |
| |
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||| |||| || |||| |||||||| |
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| T |
20289397 |
atagttgtaatggcactgttttggat |
20289372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 174 - 399
Target Start/End: Complemental strand, 53471990 - 53471765
Alignment:
| Q |
174 |
agaacatctagatcaattgaattcaatattattagatcggcgtaatgttcatactaagattgatgaagaggaagccgccttgattctgttagtttcatta |
273 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||| ||||||| || ||| |||||||||||| ||||| | | |||||||||||||||||| ||| |
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| T |
53471990 |
agaacatctagatcagttgaattcaatattattatatctgcgtaatatttatattaagattgatgatgaggatgttgtcttgattctgttagtttcttta |
53471891 |
T |
|
| Q |
274 |
ccattgtcatatgagaactttagggagtctttcattagtggtaaagattcattgtttctggaagaagttaggtatgctcttcaaagtagagaacgacgac |
373 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||||||| ||| |||||| | ||||||||||||||||| || |||| |||||||| | |||| |
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| T |
53471890 |
ccattgtcatatgagaaatttatggagtctttcattagtgttaacaattcatattctctggaagaagttaggtctgacattcacagtagagatctgcgac |
53471791 |
T |
|
| Q |
374 |
ataactgtagtgacacttttttggat |
399 |
Q |
| |
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||| |||||||||||| ||| |||| |
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| T |
53471790 |
atagttgtagtgacactatttaggat |
53471765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 177 - 426
Target Start/End: Complemental strand, 9009874 - 9009623
Alignment:
| Q |
177 |
acatctagatcaattgaattcaatattattagatcggcgtaatgttcatactaagattgatgaagaggaagccgccttgattctgttagtttcatt-acc |
275 |
Q |
| |
|
||||| ||||||| || |||| ||| |||||||| ||||||| || ||| ||| |||||||| || || |||||||| ||||||||| || || |
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| T |
9009874 |
acatccagatcaagagatttcactatgattagatctgcgtaatattgatattaaaattgatgacgatgatagtaccttgattatgttagttttttttact |
9009775 |
T |
|
| Q |
276 |
attgtcatatgagaactttagggagtctttcattagtggt-aaagattcattgtttctggaagaagttaggtatgctcttcaaagtagagaacgacgaca |
374 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| | | |||| |||||||| ||||||||||||||||| ||| ||||| | ||||||| |||| |
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| T |
9009774 |
attgtcttatgagaactttagggagtctttcattagcgttaaaagtttcattgtctctggaagaagttaggtctgcccttcacaatagagaattgtgaca |
9009675 |
T |
|
| Q |
375 |
taactgtagtgacacttttttggatagttagactattgggttagtagtaaac |
426 |
Q |
| |
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|| |||| ||| |||| ||| |||| ||||| ||||||| |||||| |||| |
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| T |
9009674 |
tatctgtcgtggcactgtttcggatggttaggctattggcctagtagcaaac |
9009623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 251 - 390
Target Start/End: Complemental strand, 13419574 - 13419435
Alignment:
| Q |
251 |
ccttgattctgttagtttcattaccattgtcatatgagaactttagggagtctttcattagtggtaaagattcattgtttctggaagaagttaggtatgc |
350 |
Q |
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|
|||||||| ||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13419574 |
ccttgattttgttagtctctttaccattgtcatatgagaaatttagggagtctttcattagtggtaaagattcattgtctctggaagaagttaggtatgc |
13419475 |
T |
|
| Q |
351 |
tcttcaaagtagagaacgacgacataactgtagtgacact |
390 |
Q |
| |
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|| || |||||||||| ||||||| |||||||| |||| |
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| T |
13419474 |
cctccacagtagagaactgcgacatagctgtagtggcact |
13419435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 252 - 382
Target Start/End: Original strand, 30046903 - 30047032
Alignment:
| Q |
252 |
cttgattctgttagtttcattaccattgtcatatgagaactttagggagtctttcattagtggtaaagattcattgtttctggaagaagttaggtatgct |
351 |
Q |
| |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||| |
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| T |
30046903 |
cttgattctattagtttctttaccattgtcatatgagaactttagggagtctttcattagtgataaatattcattgtttgtggcagaagttaggtatgc- |
30047001 |
T |
|
| Q |
352 |
cttcaaagtagagaacgacgacataactgta |
382 |
Q |
| |
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|||| |||||||||| ||||||||||||| |
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|
| T |
30047002 |
cttcgtagtagagaactgcgacataactgta |
30047032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 30046837 - 30046874
Alignment:
| Q |
174 |
agaacatctagatcaattgaattcaatattattagatc |
211 |
Q |
| |
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||||||||||||| ||| |||||||||||||||||||| |
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| T |
30046837 |
agaacatctagataaatagaattcaatattattagatc |
30046874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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