View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_24 (Length: 470)
Name: NF0941_low_24
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 65 - 459
Target Start/End: Complemental strand, 2360788 - 2360392
Alignment:
| Q |
65 |
tactaatacttctattcctgtacatgatgcttttttcgaagtgcaatctaaaattgattatttgatttagggagtgctaaatatatacctcttgtttaca |
164 |
Q |
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| T |
2360788 |
tactaatacttctactcctgcacttgatgcttttttcgaagtacaatctgaaattgattatttgatttagggagtgctaaatatatacctcttatttacg |
2360689 |
T |
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| Q |
165 |
ggatatgaaatatattcatttgtagatgttagttgtgaaacattgaactagatttacaaacacacacattatcaaaatgcaatgttattcaatcaacaaa |
264 |
Q |
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| T |
2360688 |
ggacatgaaatatatgcatttgtagatgttagttgtgaaacattgaactagatttacaaacacacgcattatcaaaatgcaatgttattcaatcaacaaa |
2360589 |
T |
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| Q |
265 |
-----ccggacgttgaagttaatgataaaataaatctcccgttatctgcaggatatcgagatgtccgaaaacagtaggtgaatgtgtaattgaaatatgn |
359 |
Q |
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| T |
2360588 |
cagagcgggatattgaagttaatgataaaataaatctcccgttatctacaggatatcgagatgtccgaaaacagtaggtgaatgtgtaattgaaatatga |
2360489 |
T |
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| Q |
360 |
nnnnnngcctataattgattaagaaaatacattagagtactaactaatgaagattaatcccaacgcacttttacatattatagtttcaaacccctttcat |
459 |
Q |
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| T |
2360488 |
aaaaaagcctataattgatcaagaaaatacattag---aataactaatgaagattaatcccaacgcacttttacatattatagtttcaaacccctttcat |
2360392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 2360834 - 2360805
Alignment:
| Q |
30 |
gatatgattgattatatataaatcacatct |
59 |
Q |
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| T |
2360834 |
gatatgattgattatatataaatcacatct |
2360805 |
T |
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