View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0941_low_3 (Length: 714)

Name: NF0941_low_3
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0941_low_3
NF0941_low_3
[»] chr6 (9 HSPs)
chr6 (88-643)||(7871050-7871612)
chr6 (243-377)||(7813982-7814116)
chr6 (263-374)||(7806761-7806872)
chr6 (247-377)||(15398186-15398316)
chr6 (247-377)||(15409973-15410103)
chr6 (439-516)||(7860097-7860174)
chr6 (264-320)||(23951615-23951671)
chr6 (565-643)||(7860229-7860307)
chr6 (244-366)||(10415656-10415778)
[»] chr7 (1 HSPs)
chr7 (246-370)||(19317660-19317784)
[»] chr1 (1 HSPs)
chr1 (252-368)||(37997596-37997712)
[»] chr5 (1 HSPs)
chr5 (255-341)||(24005974-24006060)
[»] scaffold0571 (1 HSPs)
scaffold0571 (264-377)||(411-524)


Alignment Details
Target: chr6 (Bit Score: 475; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 88 - 643
Target Start/End: Original strand, 7871050 - 7871612
Alignment:
Q  88 attcatatcttcattgtttgaaattaggtcaaccaaaacatgaagtctagtt-cagcagcacaagaaataaaaaacatgttactgaattttcaaaaga-g 185  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  7871050 attcatatcttcattgtttgaaattaggtcaacgaaaacatgaagtctagtttcagcagcacaagaaataaaaaacatgttactgaattttcaaaagaag 7871149  T
Q  186 ggaaattgctcttacaaacgctttcttccttcatcccgttccactcaggactcgaaaatggtggacagaatcagcagtttacctgatgagttgttgtctt 285  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7871150 ggaaattgctcttacaaactttttcttccttcatcccgttccactcaggactcgaaaatggtggacagaatcagtagtttacctgatgagttgttgtctt 7871249  T
Q  286 acattctctctttcctcccaaccaaactcgctttcactacgacccttctttccaaacggtggatcccactatgctattcactccctgttctcgcctttga 385  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7871250 acattctctctttcctcccaaccaaactcgctttcactacaacccttctttccaaacggtggatcccactatgctattcactccctgttctcgcctttga 7871349  T
Q  386 ctatgaagtcgacaacaaatatgaaaccaagcaagactatgaaacctttgattgcttttgtcgttttgttgacac-----tctcatgctctctcgtcctt 480  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     ||||||||||||||||||||    
T  7871350 ctatgaagtcgacaaaaaatatgaaaccaagcaagactatgaaacctttgattgcttttgtctttttgttgacactctcatctcatgctctctcgtcctt 7871449  T
Q  481 caaccaaccaacccctcaaatcatttcacctaaactttttctatggacaccccaataccgggtttaatgtgacaaaatggctaaaagccgcaaaacagca 580  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||    
T  7871450 caaccaatcaacccctcaaatcatttcacctaaactttttctatggacaccccgataccgtgtttaatgtgacaaaatggctaaaagctgcaaaacagca 7871549  T
Q  581 ttgtgttgaggagttgcatcttagtctgcgtttccacacattgaatcccgttagtttcatctc 643  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  7871550 ttgtgttgaggagttacatcttagtctgcgtttccacacattgaatcccgttattttcatctc 7871612  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 243 - 377
Target Start/End: Original strand, 7813982 - 7814116
Alignment:
Q  243 atggtggacagaatcagcagtttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttcactacgacccttctttccaaac 342  Q
    |||||||| |||||||||  |||||| |||||||| |||||| ||||||||||||| |||||||| |||||||||||| |||| ||| | |||||||| |    
T  7813982 atggtggatagaatcagcgatttaccggatgagttattgtctcacattctctcttttctcccaactaaactcgctttctctacaaccgtactttccaagc 7814081  T
Q  343 ggtggatcccactatgctattcactccctgttctc 377  Q
    | |||| |  ||| |||||||||||||||| ||||    
T  7814082 gatggaccggactctgctattcactccctgctctc 7814116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 263 - 374
Target Start/End: Complemental strand, 7806872 - 7806761
Alignment:
Q  263 tttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttcactacgacccttctttccaaacggtggatcccactatgctat 362  Q
    |||||| ||||||||  ||  ||||||||||||||| |||| ||||||||| ||||| |||||| || |||||||||| ||||||| | |||| ||||||    
T  7806872 tttaccagatgagttactgctttacattctctcttttctccaaaccaaactggcttttactacgtccattctttccaagcggtggaccgcactctgctat 7806773  T
Q  363 tcactccctgtt 374  Q
    ||||||||||||    
T  7806772 tcactccctgtt 7806761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 247 - 377
Target Start/End: Original strand, 15398186 - 15398316
Alignment:
Q  247 tggacagaatcagcagtttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttcactacgacccttctttccaaacggtg 346  Q
    |||| ||||||||| | ||||| |||||||| |||| | |||| |||||||| |||||||| ||| | ||||| ||||| ||||||||||| || |||||    
T  15398186 tggatagaatcagcggattaccagatgagttattgtgtcacatactctcttttctcccaacaaaatttgcttttactacaacccttctttctaagcggtg 15398285  T
Q  347 gatcccactatgctattcactccctgttctc 377  Q
    || |||||| | |||||||||||| ||||||    
T  15398286 gaccccactcttctattcactccccgttctc 15398316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 247 - 377
Target Start/End: Original strand, 15409973 - 15410103
Alignment:
Q  247 tggacagaatcagcagtttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttcactacgacccttctttccaaacggtg 346  Q
    |||| ||||||||| | ||||| |||||||| |||| | |||| |||||||| |||||||| ||| | ||||| ||||| ||||||||||| || |||||    
T  15409973 tggatagaatcagcggattaccagatgagttattgtgtcacatactctcttttctcccaacaaaatttgcttttactacaacccttctttctaagcggtg 15410072  T
Q  347 gatcccactatgctattcactccctgttctc 377  Q
    || |||||| | |||||||||||| ||||||    
T  15410073 gaccccactcttctattcactccccgttctc 15410103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 439 - 516
Target Start/End: Original strand, 7860097 - 7860174
Alignment:
Q  439 gcttttgtcgttttgttgacactctcatgctctctcgtccttcaaccaaccaacccctcaaatcatttcacctaaact 516  Q
    |||| ||||||||||| |||| | ||||| |||||| || ||||||||||||||| |||||||| |||| ||||||||    
T  7860097 gcttctgtcgttttgtcgacaatttcatgttctctcctctttcaaccaaccaacctctcaaatcgtttcgcctaaact 7860174  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 23951615 - 23951671
Alignment:
Q  264 ttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttc 320  Q
    |||||||||||| |||||||| | ||||||||||| |||||||||||||| ||||||    
T  23951615 ttacctgatgaggtgttgtctcatattctctcttttctcccaaccaaacttgctttc 23951671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 643
Target Start/End: Original strand, 7860229 - 7860307
Alignment:
Q  565 aagccgcaaaacagcattgtgttgaggagttgcatcttagtctgcgtttccacacattgaatcccgttagtttcatctc 643  Q
    ||||||||||||||| |  ||||||||| || ||||| | ||||  |||||| |||||||||||| ||| |||||||||    
T  7860229 aagccgcaaaacagcgtcatgttgaggaattacatctaaatctgtatttccaaacattgaatcccattattttcatctc 7860307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 244 - 366
Target Start/End: Original strand, 10415656 - 10415778
Alignment:
Q  244 tggtggacagaatcagcagtttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttcactacgacccttctttccaaacg 343  Q
    |||| ||||||||||||  |||| | |||||||| |||  |||||||||||| || | |||| |||||||  | || |||| | || ||||||| || ||    
T  10415656 tggttgacagaatcagcgatttatcagatgagttattgctttacattctctcgtttcccccagccaaactgacatttactatggccattctttcgaagcg 10415755  T
Q  344 gtggatcccactatgctattcac 366  Q
    ||||| |||||| ||||||||||    
T  10415756 gtggaccccactttgctattcac 10415778  T

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Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 246 - 370
Target Start/End: Complemental strand, 19317784 - 19317660
Alignment:
Q  246 gtggacagaatcagcagtttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttcactacgacccttctttccaaacggt 345  Q
    ||||| ||||| |||  |||||| |||||||| |||  ||||||||||||||| |||||||| ||||| ||||| |||||  || |||||||||| || |    
T  19317784 gtggatagaataagcgatttaccagatgagttattgatttacattctctcttttctcccaacaaaactagcttttactacagccattctttccaagcgtt 19317685  T
Q  346 ggatcccactatgctattcactccc 370  Q
    ||| || ||| ||||||||||||||    
T  19317684 ggacccaactctgctattcactccc 19317660  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 252 - 368
Target Start/End: Complemental strand, 37997712 - 37997596
Alignment:
Q  252 agaatcagcagtttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttcactacgacccttctttccaaacggtggatcc 351  Q
    |||||||||  |||||| |||||||| |||| |||||| |||||||| || ||||  ||||||||||| ||||| ||  ||||||| || ||||||| ||    
T  37997712 agaatcagcgatttaccagatgagttattgtgttacatactctcttttctaccaatgaaactcgcttttactacaactgttctttcaaagcggtggaccc 37997613  T
Q  352 cactatgctattcactc 368  Q
     ||| |||| |||||||    
T  37997612 tactctgctgttcactc 37997596  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 24006060 - 24005974
Alignment:
Q  255 atcagcagtttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttcactacgacccttctttccaaa 341  Q
    |||||||  ||||||||||||||  | | | ||||||||||||| || ||||||||||| |||||||| || |||||||| ||||||    
T  24006060 atcagcaacttacctgatgagttactttgtcacattctctcttttcttccaaccaaacttgctttcaccacaacccttctctccaaa 24005974  T

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Target: scaffold0571 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 524 - 411
Alignment:
Q  264 ttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttcactacgacccttctttccaaacggtggatcccactatgctatt 363  Q
    ||||||||||| ||| | | | |||| || ||||| || || | |||| ||||||||||||| ||| ||||||| ||||||||||||||||| ||| | |    
T  524 ttacctgatgaattgctatgtcacatactttcttttcttcccatcaaaatcgctttcactaccaccgttctttcgaaacggtggatcccactttgccact 425  T
Q  364 cactccctgttctc 377  Q
    ||||| || |||||    
T  424 cactcactattctc 411  T

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