View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_31 (Length: 428)
Name: NF0941_low_31
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 14745878 - 14746202
Alignment:
| Q |
18 |
agttcttgaatgtaggtttctgcgatgcctttaagaccctgcaggtgaaaacaatatcatttagcatacgatatgcattaaatttcaaattactaattag |
117 |
Q |
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| T |
14745878 |
agttcttgaatgtaggtttctgcgatgcctttaagacactgcaggtgaaaacaatatcatttagcataagatatgcattaaatttcaaattactaattag |
14745977 |
T |
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| Q |
118 |
aaaagtaggataccatagcatatagagataaatactatcttaaactcgacattaacatatgatgacaggcaaacttgttacattagagaaagtgagaaac |
217 |
Q |
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| T |
14745978 |
aaaagtaggataccatatcatatagagataaatactatcttaaactcgaccttaacatatgatgacaggcaaacttgttacattagagaaagtgagaaac |
14746077 |
T |
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| Q |
218 |
taacaaatagagaacaaagtacaagaaagaagaacaccttaagttttggagttcttgaatatttagatttagagaaagaaaagcacctctctgaaaggtt |
317 |
Q |
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| T |
14746078 |
taacaaatagagaacaaagtacaagaaagaagaacaccttaagttttggaattcttgaatatttagatttagagaaacaaaagcacctctctaaaaggtt |
14746177 |
T |
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| Q |
318 |
atgtggctccagctgaatatatatt |
342 |
Q |
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| T |
14746178 |
atgtggctccagctgaatatatatt |
14746202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 222 - 358
Target Start/End: Original strand, 14743051 - 14743179
Alignment:
| Q |
222 |
aaatagagaacaaagtacaagaaagaagaa-caccttaagttttggagttcttgaatatttagatttagagaaagaaaagcacctctctgaaaggttatg |
320 |
Q |
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| T |
14743051 |
aaatagagaacaaagtacaagaaataagaaacaccttaagttttggagattttgaatatttagatttagagaaacaaaagcacctctc---------atg |
14743141 |
T |
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| Q |
321 |
tggctccagctgaatatatatttattaagtaacatcat |
358 |
Q |
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| T |
14743142 |
tcgctcctgctgaataaatatttattaattaacatcat |
14743179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 14742946 - 14743038
Alignment:
| Q |
20 |
ttcttgaatgtaggtttct---gcgatgcctttaagaccctgcaggtgaaaacaatatcatttagcatacgatatgcattaaatttcaaatta |
109 |
Q |
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| T |
14742946 |
ttcttgaatgtaggtttcttctgcaatgcctttaagaccctgtaggcgaaaacaatatcatttagcataagatatgtattaaatttcaaatta |
14743038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 196
Target Start/End: Complemental strand, 14289789 - 14289623
Alignment:
| Q |
28 |
tgtaggtttctgcgatgcctttaagaccctgcaggtgaaaacaatatcatttagcatacgatatgcattaaatttcaaattactaattagaaaagtagga |
127 |
Q |
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| T |
14289789 |
tgtagatttctccaatgactttaagaccctgaat-tgaaaagaatatcgcttagcgtacaatatttgttaaatttcaaattacaaattaggaaagaagga |
14289691 |
T |
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| Q |
128 |
taccatagcatatagagataaatactatcttaaactcgacattaacatatgatgacaggcaaacttgtt |
196 |
Q |
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| T |
14289690 |
caccgtagcatatagagataagtattgtctt-aagtccatattaacatatgatgacaaccaaacttgtt |
14289623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 15056677 - 15056746
Alignment:
| Q |
126 |
gataccatagcatatagagataaatactatcttaaactcgacattaacatatgatgacaggcaaacttgt |
195 |
Q |
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| T |
15056677 |
gataccatagcatatagagataaaaattgtcttaaactccatactaacatatgatgacagccaaacttgt |
15056746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 15052411 - 15052323
Alignment:
| Q |
23 |
ttgaatgtaggtttctgcgatgcctttaagaccctgcaggtgaaaacaatatcatttagcatacgatatgcattaaatttcaaattact |
111 |
Q |
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| T |
15052411 |
ttgaatgtaggtttctctcatgcatttaagaccctgtaggtggaaacagtataatttagcacacaatatgtgttaaatttcaaattact |
15052323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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