View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0941_low_32 (Length: 427)

Name: NF0941_low_32
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0941_low_32
NF0941_low_32
[»] chr4 (8 HSPs)
chr4 (60-164)||(18061820-18061924)
chr4 (61-143)||(55565985-55566067)
chr4 (63-143)||(55565924-55566004)
chr4 (290-344)||(18062005-18062059)
chr4 (65-117)||(18061707-18061760)
chr4 (290-330)||(18061716-18061757)
chr4 (61-116)||(18061884-18061939)
chr4 (72-114)||(18062003-18062045)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 18061820 - 18061924
Alignment:
Q  60 ctgtcattttccggttctaaaatgtaactagccctttggagcttatcataatcatcagtatcattgtcattttccggttctaaagtgtcagtaccctttt 159  Q
    |||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18061820 ctgtcattttccggttctaaaatgtaatgagccctttggatcttatcataatcatcagtatcattgtcattttccggttctaaagtgtcagtaccctttt 18061919  T
Q  160 ggagc 164  Q
    |||||    
T  18061920 ggagc 18061924  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 55565985 - 55566067
Alignment:
Q  61 tgtcattttccggttctaaaatgtaactagccctttggagcttatcataatcatcagtatcattgtcattttccggttctaaa 143  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  55565985 tgtcattttccggttctaaaatgtaatgagccctttggatcttatcataatcatcagtatcattgtcattttccggttctaaa 55566067  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 55565924 - 55566004
Alignment:
Q  63 tcattttccggttctaaaatgtaactagccctttggagcttatcataatcatcagtatcattgtcattttccggttctaaa 143  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  55565924 tcattttccggttctaaaatgtaatgagccctttggatcttatcataatcatcagtatcattgtcattttccggttctaaa 55566004  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 18062005 - 18062059
Alignment:
Q  290 ttctaaaatgtcactagccttttggagcttatcatcatcattgccactatccttt 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18062005 ttctaaaatgtcactagccttttggagcttatcatcatcattgccactatccttt 18062059  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 18061707 - 18061760
Alignment:
Q  65 attttccggttctaaaatgtaactagccctttgg-agcttatcataatcatcag 117  Q
    |||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||    
T  18061707 attttccggttctaaaatgtcactagccttttggtagcttatcatcatcatcag 18061760  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 18061716 - 18061757
Alignment:
Q  290 ttctaaaatgtcactagccttttgg-agcttatcatcatcat 330  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  18061716 ttctaaaatgtcactagccttttggtagcttatcatcatcat 18061757  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 18061884 - 18061939
Alignment:
Q  61 tgtcattttccggttctaaaatgtaactagccctttggagcttatcataatcatca 116  Q
    |||||||||||||||||||| ||| | || || |||||||| ||||||||||||||    
T  18061884 tgtcattttccggttctaaagtgtcagtacccttttggagcgtatcataatcatca 18061939  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 18062003 - 18062045
Alignment:
Q  72 ggttctaaaatgtaactagccctttggagcttatcataatcat 114  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||    
T  18062003 ggttctaaaatgtcactagccttttggagcttatcatcatcat 18062045  T

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