View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_34 (Length: 423)
Name: NF0941_low_34
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 412
Target Start/End: Original strand, 35612522 - 35612930
Alignment:
| Q |
11 |
caaagggagctaccataaatactcatgtacattgaattcgaagag-acctaagcattacatcaaatcatatttaacacaatagatacaatcatacaacca |
109 |
Q |
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| T |
35612522 |
caaagggagctaccataaatactcatgtacactgaatttgaagaggacctaagcattacatcaaatcatatttaacacaatagattcaatcatacaacca |
35612621 |
T |
|
| Q |
110 |
tattacaaacattgcccctgaatcatggtgcatgcatgcatcaccccaatcatcggttgggaagtggggactacaattctccaataatttggaccaccca |
209 |
Q |
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| T |
35612622 |
tattacaaacattgcccctgaatcatggtgcatgcatgcatcaccccaatcatcggctgagaagtggggaatacaattcttcaataattaggaccaccca |
35612721 |
T |
|
| Q |
210 |
aattaccaatcaggaagaggtaaacatcactttccatcaatttcacatgcaatctttgtaccctcactttctggcttaattgatgtgcaatttgtacaaa |
309 |
Q |
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| T |
35612722 |
aattaccaatcaggaagaggtaaacatcattttccatcaatttcatatgcaatctttgtaccctcactttctttcttaattgatgtgcaatttgtacaaa |
35612821 |
T |
|
| Q |
310 |
attaacaagtccctatct----aacaacaacatttaagattatccaatatcaactagaggga--gttatacacgccttgtgattaaatggtaaggttcac |
403 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||| |||||||||| |||||| |||||| ||| |||||||||||||| |||||||||| |
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| T |
35612822 |
attaacaagtacctatctaacaaacaacaacatttaagattatctaatatcaactcgagggaatgttatatacggcttgtgattaaatgttaaggttcac |
35612921 |
T |
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| Q |
404 |
aacgagttt |
412 |
Q |
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| T |
35612922 |
aacgagttt |
35612930 |
T |
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