View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0941_low_40 (Length: 395)

Name: NF0941_low_40
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0941_low_40
NF0941_low_40
[»] chr2 (1 HSPs)
chr2 (89-382)||(17470707-17471000)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 89 - 382
Target Start/End: Original strand, 17470707 - 17471000
Alignment:
Q  89 aacatgtaagaaaatacctcggttttctaggtacaacaatttcatacgcaaatcatcacctgccttagcaagagaaagagatgcctccccatgcaaaggc 188  Q
    |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  17470707 aacatgtaggaaagtacctcggttttccaggtacaacaatttcatacgcaaatcatcccctgccttagcaagagaaagagatgcctccccatgtaaaggc 17470806  T
Q  189 tcccttatctcagcttgctctaatatctctatacataatcgatcattcgaagaaacctttgcttcctcagtagatttataataatccacagctttcgtac 288  Q
    |||||| ||||||||||||| ||||||||||| || |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  17470807 tcccttctctcagcttgctccaatatctctatgcacaatcgatcattcgaagaaacttttccttcctcagtagatttataataatccacagctttcgtac 17470906  T
Q  289 aacgctttgaaatctgaagagcttttctgccatccatagtgagttcagaaggttgagctcccttcgttaacaaagatacaataatcttcggttc 382  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17470907 aacgttttgaaatctgaagagcttttctgccatccatagtgagttcagaaggttgagctcccttcgttaacaaagatacaataattttcggttc 17471000  T

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