View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_42 (Length: 391)
Name: NF0941_low_42
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 30 - 382
Target Start/End: Complemental strand, 49562842 - 49562490
Alignment:
| Q |
30 |
tcatccttctagttacaatttttgtgtcgcattgttggccaaaaaggctatcactaaatcccaatgggatgccaaagtcgatgccttgaagagctggggt |
129 |
Q |
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| T |
49562842 |
tcatccttctagttacaatttttgtgtcgcattgttggccaaaaaggccatcactaaatcccaatgggattccaaagtcgatgccttgaagagctggggt |
49562743 |
T |
|
| Q |
130 |
tattctgaagatgcaattttaactgcatttaaaagaggccctaaccttatgctacggtctttggacaaactcaatgcagtgatgcgtttttggatccaac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49562742 |
tattctgaagatgcaattttaactgcatttaaaagagggcctaaccttatgctacggtctttggacaaactcaatgcggtgatgcgtttttggatccaac |
49562643 |
T |
|
| Q |
230 |
aacttggttgggatcctttattgctcctggcagcaccagagcttttcggacttagtatagagaaaaggcttagtccaagggcttcggttatccggtatct |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49562642 |
aacttggttgggatcctttattgctcctggcagcaccagagcttttcggacttagtatagagaaaaggcttagtccaagggcttcagttatccggtatct |
49562543 |
T |
|
| Q |
330 |
tctttccaaaggtttgatgaagaaggatgctagcttaactgcaccatattatt |
382 |
Q |
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| T |
49562542 |
tctttccaaaggtttgatgaagaaggatgctagcttaactgcaccattttatt |
49562490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 43 - 366
Target Start/End: Original strand, 49904601 - 49904924
Alignment:
| Q |
43 |
tacaatttttgtgtcgcattgttggccaaaaaggctatcactaaatcccaatgggatgccaaagtcgatgccttgaagagctggggttattctgaagatg |
142 |
Q |
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|||||||||||||| ||||| |||||||||| |||| |||| ||||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||| |
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| T |
49904601 |
tacaatttttgtgtagcattattggccaaaagggctgtcaccaaatcccaatgggatgccaaagttgatgtcttgaagagttggggttgttctgaagatg |
49904700 |
T |
|
| Q |
143 |
caattttaactgcattta-aaagaggccctaaccttatgctacggtctttggacaaactcaatgcagtgatgcgtttttggatccaacaacttggttggg |
241 |
Q |
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|| |||| | |||||||| ||| ||| ||| |||||||| ||||| || |||||||||||||||||| |||||||| || | | |||||||||| |
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| T |
49904701 |
cagtttttaatgcatttaggaagcaaccc-aactttatgctaaggtctccagataaactcaatgcagtgatgagtttttgggtcgaggagcttggttggg |
49904799 |
T |
|
| Q |
242 |
atcctttattgctcctggcagcaccagagcttttcggacttagtatagagaaaaggcttagtccaagggcttcggttatccggtatcttctttccaaagg |
341 |
Q |
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|||||| ||||| | || | || |||||| ||| |||||| |||||||||||||||||||||| || || || ||||||||| |||||||| |
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| T |
49904800 |
atccttcgctgctcttagctgagccgacgctttttggatacagtatacagaaaaggcttagtccaagggcatcaattgtcaagtatcttctatccaaagg |
49904899 |
T |
|
| Q |
342 |
tttgatgaagaaggatgctagctta |
366 |
Q |
| |
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||||||||| ||| |||||||||| |
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| T |
49904900 |
tttgatgaaagagggtgctagctta |
49904924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 288 - 382
Target Start/End: Complemental strand, 49571432 - 49571338
Alignment:
| Q |
288 |
agagaaaaggcttagtccaagggcttcggttatccggtatcttctttccaaaggtttgatgaagaaggatgctagcttaactgcaccatattatt |
382 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49571432 |
agagaaaaggcttagtccaagggcttctgttatccagtatcttctttccaaaggtttgatgaagaaggatgctagcttaactgcaccattttatt |
49571338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 176 - 354
Target Start/End: Original strand, 49905402 - 49905580
Alignment:
| Q |
176 |
ttatgctacggtctttggacaaactcaatgcagtgatgcgtttttggatccaacaacttggttgggatcctttattgctcctggcagcaccagagctttt |
275 |
Q |
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|||||||||||||| ||||||| ||||||| ||||||| |||||||||| |||| | ||||||||||||||| ||||| || ||| ||||| ||| |
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| T |
49905402 |
ttatgctacggtctagggacaaattcaatgcggtgatgcatttttggatcaaacagcatggttgggatcctttcgtgctcttgaaagctccagatatttc |
49905501 |
T |
|
| Q |
276 |
cggacttagtatagagaaaaggcttagtccaagggcttcggttatccggtatcttctttccaaaggtttgatgaagaag |
354 |
Q |
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|||| ||||| ||||||||||||||| |||||||||| | ||||||||||||||||| || |||||||||||||||||| |
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| T |
49905502 |
cggatttagtctagagaaaaggcttattccaagggctactgttatccggtatcttctctctaaaggtttgatgaagaag |
49905580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 43 - 366
Target Start/End: Complemental strand, 49558666 - 49558344
Alignment:
| Q |
43 |
tacaatttttgtgtcgcattgttggccaaaaaggctatcactaaatcccaatgggatgccaaagtcgatgccttgaagagctggggttattctgaagatg |
142 |
Q |
| |
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||||| |||||||| ||||| |||||||||| |||| |||| |||||||| |||||||| ||| | |||| ||||||||| ||||||| ||||||||||| |
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| T |
49558666 |
tacaacttttgtgtagcattattggccaaaagggctgtcaccaaatcccagtgggatgctaaatttgatgtcttgaagagttggggttgttctgaagatg |
49558567 |
T |
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| Q |
143 |
caattttaactgcatttaa-aagaggccctaaccttatgctacggtctttggacaaactcaatgcagtgatgcgtttttggatccaacaacttggttggg |
241 |
Q |
| |
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||||| | |||||||| ||| ||| ||| ||||| |||||||| |||||||||||| |||||||| | |||||| || | | ||||| |||| |
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| T |
49558566 |
atatttttaatgcatttaggaagcaaccc-aactttatgttacggtctccagacaaactcaat-cagtgatgagattttgggtcgatgagcttgggtggg |
49558469 |
T |
|
| Q |
242 |
atcctttattgctcctggcagcaccagagcttttcggacttagtatagagaaaaggcttagtccaagggcttcggttatccggtatcttctttccaaagg |
341 |
Q |
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||||||| ||||| | | | ||||| |||| || |||||||||||||||||||| |||||||||||| |||||| ||||||||| |||||||| |
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| T |
49558468 |
atcctttgctgctcttaactgaaccagcaatttttgggtatagtatagagaaaaggcttattccaagggcttcagttatcaagtatcttctatccaaagg |
49558369 |
T |
|
| Q |
342 |
tttgatgaagaaggatgctagctta |
366 |
Q |
| |
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|||||||||||||| | |||||||| |
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| T |
49558368 |
tttgatgaagaagggttctagctta |
49558344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 9421406 - 9421327
Alignment:
| Q |
43 |
tacaatttttgtgtcgcattgttggccaaaaaggctatcactaaatcccaatgggatgccaaagtcgatgccttgaagag |
122 |
Q |
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|||||||||||||| ||||| | ||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
9421406 |
tacaatttttgtgtggcattacccgacaaaagggctatcaccaaatcccaatgggatgccaaagttgatgccttgaagag |
9421327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 9441452 - 9441372
Alignment:
| Q |
42 |
ttacaatttttgtgtcgcattgttggccaaaaaggctatcactaaatcccaatgggatgccaaagtcgatgccttgaagag |
122 |
Q |
| |
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||||||||||||||| ||||| |||||||| ||||||| | |||||||||||||| |||||||| ||||||| |||||| |
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| T |
9441452 |
ttacaatttttgtgtggcattaccggccaaaagggctatctccaaatcccaatgggacgccaaagttgatgcctcgaagag |
9441372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 322
Target Start/End: Original strand, 5669574 - 5669687
Alignment:
| Q |
209 |
tgatgcgtttttggatccaacaacttggttgggatcctttattgctcctggcagcaccagagcttttcggacttagtatagagaaaaggcttagtccaag |
308 |
Q |
| |
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|||| ||||||||||| |||||||||||||| |||||||| ||||||| |||||| || |||||| || | || || ||||| ||| | | |||||| |
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| T |
5669574 |
tgatacgtttttggatagaacaacttggttggaatcctttagtgctcctttaagcaccggatcttttcagattcagcattgagaataggttaattccaag |
5669673 |
T |
|
| Q |
309 |
ggcttcggttatcc |
322 |
Q |
| |
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|||||| ||||||| |
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| T |
5669674 |
ggcttctgttatcc |
5669687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 322
Target Start/End: Original strand, 5693245 - 5693358
Alignment:
| Q |
209 |
tgatgcgtttttggatccaacaacttggttgggatcctttattgctcctggcagcaccagagcttttcggacttagtatagagaaaaggcttagtccaag |
308 |
Q |
| |
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|||| ||||||||||| |||||||||||||| |||||||| ||||||| |||||| || |||||| || | || || ||||| ||| | | |||||| |
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| T |
5693245 |
tgatacgtttttggatagaacaacttggttggaatcctttagtgctcctttaagcaccggatcttttcagattcagcattgagaataggttaattccaag |
5693344 |
T |
|
| Q |
309 |
ggcttcggttatcc |
322 |
Q |
| |
|
|||||| ||||||| |
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| T |
5693345 |
ggcttctgttatcc |
5693358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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