View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_44 (Length: 379)
Name: NF0941_low_44
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 136 - 334
Target Start/End: Original strand, 6032871 - 6033069
Alignment:
| Q |
136 |
gggcttcaaatctttggaaaatcatgggaggattgcaataccagtccaaatcgatattagctgatatttttcagcatattctgagatcataagaatgaat |
235 |
Q |
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| T |
6032871 |
gggcttcaaatctttggaaaatcatgggaggattgcaataccagtccaaatcgatattagctgatatttttcagcatattctgagatcataagaatgaat |
6032970 |
T |
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| Q |
236 |
tattctaaaagtgcttttacaaagaatcgttttgatatggagacatttcattttctgttctatttttccctttagacaatgtctgtattctgtactaaa |
334 |
Q |
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| T |
6032971 |
tattctaaaagtgcttttacaaagaatcgttttcatatggagacatttcattttctgttctatttttccctttagacaatgtctgtattctgtactaaa |
6033069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 6032730 - 6032802
Alignment:
| Q |
1 |
atgaatctatcaccaggtaactagtgtttttctttatttgataattgtttcactgtttcaaaacataaaatta |
73 |
Q |
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| T |
6032730 |
atgaatctatcatcaggtaactagtgtttttctttatttgataattgtttcactgtttcaaaacataaaatta |
6032802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 6712976 - 6713012
Alignment:
| Q |
136 |
gggcttcaaatctttggaaaatcatgggaggattgca |
172 |
Q |
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| T |
6712976 |
gggctccaaatctttggaaaatcatgggaggaatgca |
6713012 |
T |
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