View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0941_low_47 (Length: 363)
Name: NF0941_low_47
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_47 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 33950138 - 33950438
Alignment:
| Q |
1 |
ttttaaaataataatgtcaaatacaatgtacaatcgcggcgtaaaagaataaacaaaacatggtatgaattgtacatttgtttatttttatggtgaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33950138 |
ttttaaaataataatgtcaaatacaatgtacaatcgcggcgtaaaagaataaacaaaacatggtatgaattgtacatttgtttatttttatggtgaaatg |
33950237 |
T |
|
| Q |
101 |
gcctactgaataatgccacacgttaacatnnnnnnnccaaattttaatgagtaagtaacacataaccaagtttgtttgtttctgacaaaacagcg-tccg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
33950238 |
gcctactgaataatgccacacgttaacataaaaaaaccatattttaacgagta---cacacattaccaagtttgtttctttcttacaaaacagcgttccg |
33950334 |
T |
|
| Q |
200 |
aatatttaagtnnnnnnngacaaagaaaggaaagaataacgaagattagtacgtaatgtgccggaaagagacaaagaagaacacggtaccattccattct |
299 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
33950335 |
aatatttaagtaaaaaaagacaaagaaaggaaagaataacgaagattagtacgtaatgtgccggaaagagataaaaaagaacacggtaccattccattct |
33950434 |
T |
|
| Q |
300 |
tgat |
303 |
Q |
| |
|
|||| |
|
|
| T |
33950435 |
tgat |
33950438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 8279112 - 8279043
Alignment:
| Q |
230 |
aaagaataacgaagattagtacgtaatgtgccggaaagagacaaagaagaacacggtaccattccattctt |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
8279112 |
aaagaataacgaagattagtacgcaatgtgccggaaagaga-gaagaagaacacggtaccattcctttctt |
8279043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University