View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0941_low_49 (Length: 343)
Name: NF0941_low_49
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_49 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 82 - 332
Target Start/End: Complemental strand, 38814430 - 38814181
Alignment:
| Q |
82 |
acgtatataaaacaaaatttcaaataaaagaatcctctacacgatgctagcaaaacaagagaatgaaattaggcaagtatactagcaaggaaactggatg |
181 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38814430 |
acgtatataaa-caaaatttcaaataaaagaatcctctacacgatgctagcaaaacaagagaatgaaattaggcaagtatactagcaaggaaactggatg |
38814332 |
T |
|
| Q |
182 |
atcgtaacacgcatggtaattaaaaagaattcctaattgaaagacaattgccggtagcacaattaaattatatatgtcctattctgcaaacaaggttcat |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38814331 |
atcgtaacacgcatggtaattaaaaagaattcctaattgaaagacaatcgccggtagcacaattaaattatatatgtcctattctgcaaacaaggttcat |
38814232 |
T |
|
| Q |
282 |
agatgcgagtgttgccaatcaaagatcacggaaaatattaagtttgttcat |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38814231 |
agatgcgagtgttgccaatcaaagatcacggaaaatattaagtttgttcat |
38814181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 33471814 - 33471753
Alignment:
| Q |
91 |
aaacaaaatttcaaataaaagaatcctctacacgatgctagcaaaacaagagaatgaaatta |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33471814 |
aaacaaaatttcaaataaaagaatcctctacacgatgctagcaaaacaagagaacgaaatta |
33471753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 25983710 - 25983650
Alignment:
| Q |
92 |
aacaaaatttcaaataaaagaatcctctacacgatgctagcaaaacaagagaatgaaatta |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
25983710 |
aacaaaatttcaaataaaagaatcctctacacaatgctagcaaaacaagaaaatgaaatta |
25983650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 42024815 - 42024874
Alignment:
| Q |
91 |
aaacaaaatttcaaataaaagaatcctctacacgatgctagcaaaacaagagaatgaaatta |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| |
|
|
| T |
42024815 |
aaacaaaatttcaaataaaagaatcctctaca--aagcaagcaaaacaagagaatgaaatta |
42024874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 9473394 - 9473445
Alignment:
| Q |
101 |
tcaaataaaagaatcctctacacgatgctagcaaaacaagagaatgaaatta |
152 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||||||||||||||||||| |
|
|
| T |
9473394 |
tcaaataaaagaatcatttacacaatgctagcaaaacaagagaatgaaatta |
9473445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University