View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_5 (Length: 647)
Name: NF0941_low_5
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 129 - 586
Target Start/End: Original strand, 10970298 - 10970757
Alignment:
| Q |
129 |
cacagacaaaagatgaacaacttactcgattaaaatacaggaacaacatcttttcctcatctccagcgcttcttctgaaaatttattagaaaatggttta |
228 |
Q |
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| T |
10970298 |
cacagacaaaagatgaacaacttactcgattaaaatacaggaacaacatcttttcctcatctccagcgcttcttctgaaaatttattagaaaatggttta |
10970397 |
T |
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| Q |
229 |
taaacaagtgaagcagcatatgtatttgttcatataaatttccatttcagtactaaagatgtttcaagtattcaattacattagcgattctagattctac |
328 |
Q |
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| T |
10970398 |
taaacaagtgaagcagcataggtatttgttcatataaatttccatttcagtactaaagatgtttcaagtattcaattacattagcgattctagattctac |
10970497 |
T |
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| Q |
329 |
acagtcaggaaaagcatgcagtt--gagatcccaactgttaattgaagatcagatgacttgtattacgagatgtatattttaaagtggatttggtaaaat |
426 |
Q |
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| T |
10970498 |
acagtcaggaaaagcatgcagtcaagagatcccaactgttaattgaagatcagatgacttgtattacgagatgtatattttaaagtggatttggtaaaat |
10970597 |
T |
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| Q |
427 |
cataatacaagtctaatcttcatcttatagtcgagatccatgaccacatcactgcacaaaatccaaacccttaacaaataaggcttcaatgaaattcaat |
526 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10970598 |
cataatacaagtctaatcttcatcttatagtcgagatccatgaccacatcactgcacaaaatccaaacccttaacaaataaggcttcaatgaaattcaat |
10970697 |
T |
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| Q |
527 |
gcatagattaacatgatctcatgaaatctaattgagcaatcaattttcattagaatttag |
586 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10970698 |
gcattgattaacatgatctcatgaaatctaattgagcaatcaatttccattagaatttag |
10970757 |
T |
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