View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_51 (Length: 330)
Name: NF0941_low_51
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 2 - 311
Target Start/End: Original strand, 16814386 - 16814695
Alignment:
| Q |
2 |
gaaatggcaaaccgttgttacaacatcgtctatggcggcggttgtccaaggttgtcttataaacccgatgttgctccccatcctcaacatcagggtcggt |
101 |
Q |
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| T |
16814386 |
gaaatggcaaaccgttgttacaacatcgtctatggcggcggtcgtccacagttgtcttataaacccgttgttgctctccatcctcaacatcagggtcggt |
16814485 |
T |
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| Q |
102 |
tctttctctgaaggcatagtccagaatctgcctcttcttggtggaggatgctggtttctgtggattaaaacattggttgttataggccgtaaaatgttat |
201 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||||| | |
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| T |
16814486 |
tctttctctgaaggcatagtccagaatctgccttttcttggtggtggatgctggtttctgttgatcaaaacattggttgttataggctgtaaaatgttgt |
16814585 |
T |
|
| Q |
202 |
tctattcgccgatgtatgtgttcgaatacccttttacaggtttgatttctcaaaatatgcgtttcacgcatggttatgctcccccaagatcatcgttagt |
301 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |
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| T |
16814586 |
tctattccccgatgtatgtgttcgaatacccttttacaggtttgatttctcaaaatatgcgtttcacgcatggttctgttcccccaagatcattgttagt |
16814685 |
T |
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| Q |
302 |
gtggttgtta |
311 |
Q |
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|||||||||| |
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| T |
16814686 |
gtggttgtta |
16814695 |
T |
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