View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_58 (Length: 316)
Name: NF0941_low_58
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 93 - 238
Target Start/End: Original strand, 6875834 - 6875980
Alignment:
| Q |
93 |
caataacacctcaagataatgtatttatggattttctcacttataaaatgttcaactcacacttgtacacaacaccc-ccttaagtttcattgtgctccc |
191 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| ||||||| |
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| T |
6875834 |
caataacacctcaagataatgtatttatgggttctctcacttataaaatgttcaacttacacttatacacaacaccctccttaagtttcattatgctccc |
6875933 |
T |
|
| Q |
192 |
ccacaagcgaaagttctttcatctgcaattacgtcgttgctgctttc |
238 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6875934 |
ccacaagcgaaagttctttcatctgcaattatgtcgttgctgctttc |
6875980 |
T |
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