View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_60 (Length: 314)
Name: NF0941_low_60
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 21433798 - 21433493
Alignment:
| Q |
1 |
ttacataattcagaaaaaacaagtcagaaactagcagcgcactcgcctttttattatcatcaagaattaggatagaactttctgtccccaacacaagatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21433798 |
ttacataattcagaaaaaacaagtcagaaactagcagcgcactcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagatt |
21433699 |
T |
|
| Q |
101 |
cagatccttctccttcatttcagtcccatcatctcgagaaatcaccttatctttgaagaatttcccttgaggatcaagcagcctggccatctctaatgag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21433698 |
cagatccttctccttcatttcagtcccatcatctcgagaaatcaccttatctttgaagaatttcccttgaggatcaagcagcctggccatctctaatgag |
21433599 |
T |
|
| Q |
201 |
taccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggccattctttgcc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21433598 |
taccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggccattctttgcc |
21433499 |
T |
|
| Q |
301 |
tatgct |
306 |
Q |
| |
|
|||||| |
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|
| T |
21433498 |
tatgct |
21433493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 27075515 - 27075793
Alignment:
| Q |
15 |
aaaaacaagtcagaaactagcagcgcactcgcctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatccttctcct |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||| || |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| | | |
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| T |
27075515 |
aaaaacaagtcagaaactagcagtgcactcacctcttctttatcatcaagaattaagatagaattttctgtccccaacacaagatccagatccttcacat |
27075614 |
T |
|
| Q |
115 |
tcatttcagtcccatcatctcgagaaatcaccttatctttgaagaatttcccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacc |
214 |
Q |
| |
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|| ||| ||||||||| ||||||||||| ||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||| || |||||||||| |
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| T |
27075615 |
tcttttgagtcccatcctctcgagaaattaccttatctttgaagtattcctcttgaggatcaagcagcctagccatctctaatgaatattgccgatcacc |
27075714 |
T |
|
| Q |
215 |
catggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggccatt |
293 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
27075715 |
catggtgtagatgtacatttcaaacatttcacttgcttgtttaagaaatgtgcggacaaagggcctcaacttggtcatt |
27075793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 57 - 293
Target Start/End: Complemental strand, 26989743 - 26989507
Alignment:
| Q |
57 |
tcatcaagaattaggatagaactttctgtccccaacacaagattcagatccttctccttcatttcagtcccatcatctcgagaaatcaccttatctttga |
156 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||| | ||| ||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
26989743 |
tcatcaagaattatgatagaattttctgtccccaacacaagatccagatctttcacgttcttttgagtcccatcatctcgagaaattaccttatctttga |
26989644 |
T |
|
| Q |
157 |
agaatttcccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttcttt |
256 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26989643 |
agtattccccttgaggatcaagcagcctggccatctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttcttt |
26989544 |
T |
|
| Q |
257 |
aagaaatgtgcggacaaagggcctcaacttggccatt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
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|
| T |
26989543 |
aagaaatgtgcggacaaagggcctcaacttggtcatt |
26989507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 27 - 293
Target Start/End: Complemental strand, 27028592 - 27028326
Alignment:
| Q |
27 |
gaaactagcagcgcactcgcctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatccttctccttcatttcagtcc |
126 |
Q |
| |
|
||||||||||| |||||| ||| || |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| | ||| ||| ||||| |
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|
| T |
27028592 |
gaaactagcagtgcactcacctcttctttatcatcaagaattaagatagaattttctgtccccaacacaagatccagatccttcacgttcttttgagtcc |
27028493 |
T |
|
| Q |
127 |
catcatctcgagaaatcaccttatctttgaagaatttcccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacccatggtgtagat |
226 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27028492 |
catcctctcgagaaattaccttatctttgaagtagagcccttgaggatcaagcagcttggccatctctaacgagtaccgccgatcacccatggtgtagat |
27028393 |
T |
|
| Q |
227 |
gtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggccatt |
293 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27028392 |
gtacatttcaaacatttcacttgcttctttaagaaatgtgcggacaaagggcctcaacttggtcatt |
27028326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 27152765 - 27152470
Alignment:
| Q |
5 |
ataattcagaaaaaacaagtcagaaactagcagcgcactcgcctttttatt-atcatcaagaattaggatagaactttctgtccccaacacaagattcag |
103 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| |||||| ||||||| || |||||||||||||| || ||||| |||||||||||||| |||||| |
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|
| T |
27152765 |
ataattcagaaaaaaccaatcagaaactagcagtgcactcacctttttttttatcatcaagaattattattacactttttgtccccaacacaacattcag |
27152666 |
T |
|
| Q |
104 |
atccttctccttcatttcagtcccatcatctcgagaaatcaccttatctttgaagaatttcccttgaggatcaagcagcctggccatctctaatgagtac |
203 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||| ||| ||| |
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|
| T |
27152665 |
atccttctgcttcatttcagtcccatcatctcaataaatcaccttatctttgaagtattccacttgaggatcaagcagcttggccatctctagtgaatac |
27152566 |
T |
|
| Q |
204 |
cgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggccattctttgc |
299 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
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|
| T |
27152565 |
tgccgaatacccatggtgtagatgtacatttcaaacacttcacttgcttctttaagaaatgtacggacgaagggcctcaacttgttcattctttgc |
27152470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 57 - 293
Target Start/End: Complemental strand, 34691818 - 34691582
Alignment:
| Q |
57 |
tcatcaagaattaggatagaactttctgtccccaacacaagattcagatccttctccttcatttcagtcccatcatctcgagaaatcaccttatctttga |
156 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||| | ||| ||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
34691818 |
tcatcaagaattacgatagaattttctgtccccaacacaagatccagatctttcacgttcttttgagtcccatcatctcgagaaattaccttatctttga |
34691719 |
T |
|
| Q |
157 |
agaatttcccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttcttt |
256 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
34691718 |
agtattccccttgaggatcaagcagcctggccatctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttcttt |
34691619 |
T |
|
| Q |
257 |
aagaaatgtgcggacaaagggcctcaacttggccatt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34691618 |
aagaaatgtgcggacaaagggcctcaacttggtcatt |
34691582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 122 - 286
Target Start/End: Original strand, 50172854 - 50173018
Alignment:
| Q |
122 |
agtcccatcatctcgagaaatcaccttatctttgaagaatttcccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacccatggtg |
221 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||| |||||||||| |||| || ||| ||||||||||||| |
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|
| T |
50172854 |
agtcccatcatctcgagaaatcactttagaattgaagtattctccttgaggatcaagcagcttggccatctccaatgcatagggcctatcacccatggtg |
50172953 |
T |
|
| Q |
222 |
tagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaactt |
286 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50172954 |
tagatgtacatctcaaacatttcacttgcttctttaagaaatgtacggacaaagggcctcaactt |
50173018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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