View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_68 (Length: 294)
Name: NF0941_low_68
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 21433963 - 21433681
Alignment:
| Q |
1 |
ccaatgatagggcaccaaatcagttttacatttgcatttcatatgactatagagttctttgattcatattatacaactgtgtttaatttgtcaatttgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
21433963 |
ccaatgatagggcaccaaatcagttttacatttgcatttcatatgactatagagttctttgattcatattatacaattgtgtttaatttgtccatttgta |
21433864 |
T |
|
| Q |
101 |
taggtaaaaagaagtatattttgaaattgttcatagattaactatcactacactaaccattccaattacataattcagaaaaaacaagtcagaaactagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21433863 |
taggtaaaaagaagtatattttgaaattgttcatagattaactaccactacactaaccattccaattacataattcagaaaaaacaagtcagaaactagc |
21433764 |
T |
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| Q |
201 |
agcgcactcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatccttctccttcat |
283 |
Q |
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| T |
21433763 |
agcgcactcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatccttctccttcat |
21433681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 40 - 283
Target Start/End: Complemental strand, 27152895 - 27152651
Alignment:
| Q |
40 |
catatgactatagagttctttgattcatattatacaactgtgtttaatttgtcaatttgtataggtaaaaagaagtatattttgaaattgt-----tcat |
134 |
Q |
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||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||| || |||||| ||| | |||| |
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| T |
27152895 |
catatgattatagcgttctttgattcatattatacaattgtgtttagtttgttaattcatataggtaaaaagaaaaatgttttgagattttcatcctcat |
27152796 |
T |
|
| Q |
135 |
agattaactatcactacactaaccattccaattacataattcagaaaaaacaagtcagaaactagcagcgcactcacct-ttttattatcatcaagaatt |
233 |
Q |
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| T |
27152795 |
agattaactatcacga-----accattccaattagataattcagaaaaaaccaatcagaaactagcagtgcactcacctttttttttatcatcaagaatt |
27152701 |
T |
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| Q |
234 |
aggatagaactttctgtccccaacacaagattcagatccttctccttcat |
283 |
Q |
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| T |
27152700 |
attattacactttttgtccccaacacaacattcagatccttctgcttcat |
27152651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 27075494 - 27075610
Alignment:
| Q |
159 |
attccaattacataattcagaaaaaacaagtcagaaactagcagcgcactcacctttttattatcatcaagaattaggatagaactttctgtccccaaca |
258 |
Q |
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|||| ||||| | ||||| | ||||||||||||||||||||||| |||||||||| || |||||||||||||||| ||||||| ||||||||||||||| |
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| T |
27075494 |
attctaattaaacaattccgcaaaaacaagtcagaaactagcagtgcactcacctcttctttatcatcaagaattaagatagaattttctgtccccaaca |
27075593 |
T |
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| Q |
259 |
caagattcagatccttc |
275 |
Q |
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|||||| |||||||||| |
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| T |
27075594 |
caagatccagatccttc |
27075610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 192 - 275
Target Start/End: Complemental strand, 27028592 - 27028509
Alignment:
| Q |
192 |
gaaactagcagcgcactcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatccttc |
275 |
Q |
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||||||||||| |||||||||| || |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |
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| T |
27028592 |
gaaactagcagtgcactcacctcttctttatcatcaagaattaagatagaattttctgtccccaacacaagatccagatccttc |
27028509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 26989761 - 26989694
Alignment:
| Q |
204 |
gcactcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatc |
271 |
Q |
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|||||||||| || || ||||||||||||| ||||||| ||||||||||||||||||||| |||||| |
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| T |
26989761 |
gcactcacctcttctttgtcatcaagaattatgatagaattttctgtccccaacacaagatccagatc |
26989694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 34691836 - 34691769
Alignment:
| Q |
204 |
gcactcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatc |
271 |
Q |
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|||||||||| || || ||||||||||||| ||||||| ||||||||||||||||||||| |||||| |
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| T |
34691836 |
gcactcacctcttctttgtcatcaagaattacgatagaattttctgtccccaacacaagatccagatc |
34691769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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