View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0941_low_69 (Length: 289)
Name: NF0941_low_69
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_69 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 64 - 271
Target Start/End: Complemental strand, 24273770 - 24273563
Alignment:
| Q |
64 |
aatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaacaactaaggtgatatcctcttcagaatgtgtaccatcc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24273770 |
aatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaacaactaaggtgatatcctcttcagaatgtgtaccatcc |
24273671 |
T |
|
| Q |
164 |
tcagcaacaacgacattacacggcaccttctcttgttgcatctacctcttcttgggataataatgcttccaatgccccttctccttacaataattgaaaa |
263 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
24273670 |
tcgacaacaacgacattacacggtgccttctcttgttgcatctacctcttcttgggataatcatgcttccaatgccccttctccttacagtaattgcaaa |
24273571 |
T |
|
| Q |
264 |
tatcaatc |
271 |
Q |
| |
|
|||||||| |
|
|
| T |
24273570 |
tatcaatc |
24273563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 53471489 - 53471603
Alignment:
| Q |
64 |
aatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaacaactaaggtgatatcctcttcagaatgtgtaccatcc |
163 |
Q |
| |
|
|||||||||||| ||| |||||| ||||||||||||||| ||||||||||||| || |||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
53471489 |
aatatgataagatgctccggaatccagaacccacacatcagtgtaatgtgtgtggccatcaacaactaaggcgatatcctcttcggaatgtgtaccatcc |
53471588 |
T |
|
| Q |
164 |
tcagcaacaacgaca |
178 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
53471589 |
tcggcaacaacgaca |
53471603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 64 - 268
Target Start/End: Original strand, 9009346 - 9009550
Alignment:
| Q |
64 |
aatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaacaactaaggtgatatcctcttcagaatgtgtaccatcc |
163 |
Q |
| |
|
|||||||||||| ||| ||||| | |||||||||||| |||||||||||||| | |||||||||||| |||| ||| ||| ||||||||| ||||| |
|
|
| T |
9009346 |
aatatgataagattctccagaatccaaaacccacacatcggtgtaatgtgtgtgaccttcaacaactaaggcgataaccttttcggaatgtgtatcatcc |
9009445 |
T |
|
| Q |
164 |
tcagcaacaacgacattacacggcaccttctcttgttgcatctacctcttcttgggataataatgcttccaatgccccttctccttacaataattgaaaa |
263 |
Q |
| |
|
|| |||||| ||||||||| | |||||| ||||||||| | ||||||||||||| ||| || ||||||||| | ||||||||||| |||||| ||| |
|
|
| T |
9009446 |
tcggcaacagagacattacatgatgccttctattgttgcattttcctcttcttgggacaatcattcttccaatggtcattctccttacagtaattgcaaa |
9009545 |
T |
|
| Q |
264 |
tatca |
268 |
Q |
| |
|
||||| |
|
|
| T |
9009546 |
tatca |
9009550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 266
Target Start/End: Original strand, 13419183 - 13419323
Alignment:
| Q |
126 |
caactaaggtgatatcctcttcagaatgtgtaccatcctcagcaacaacgacattacacggcaccttctcttgttgcatctacctcttcttgggataata |
225 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||| |||||||||||||||||| |||| | ||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
13419183 |
caactaaggggatatcttcttcggaatgtgtaccttcctcagcaacaacgacaatacatgataccttctgttgttgcattagcctcttcttgggacaatc |
13419282 |
T |
|
| Q |
226 |
atgcttccaatgccccttctccttacaataattgaaaatat |
266 |
Q |
| |
|
|| |||| ||||| ||||||| ||||| |||||| |||||| |
|
|
| T |
13419283 |
attcttctaatgctccttctctttacagtaattgcaaatat |
13419323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 30047337 - 30047246
Alignment:
| Q |
64 |
aatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaacaactaaggtgatatcctcttcagaatgtg |
155 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| ||| | |||||||||||| || ||||||||||||||||||||||||| ||||||| |
|
|
| T |
30047337 |
aatatgataagacgctccggaatctagaacccacatatcggtataatgtgtgtgaccatcaacaactaaggtgatatcctcttcggaatgtg |
30047246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 13417886 - 13417940
Alignment:
| Q |
64 |
aatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtga |
118 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||| | |||||||||||||| |
|
|
| T |
13417886 |
aatatgataagacgcttcggaatctagaacccatacattagtgtaatgtgtgtga |
13417940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 30047200 - 30047142
Alignment:
| Q |
210 |
tcttcttgggataataatgcttccaatgccccttctccttacaataattgaaaatatca |
268 |
Q |
| |
|
||||||||||| ||| || ||||||||| |||||||| ||||| |||||| |||||||| |
|
|
| T |
30047200 |
tcttcttgggacaatcatacttccaatgtcccttctctttacagtaattgcaaatatca |
30047142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 143 - 268
Target Start/End: Original strand, 20289145 - 20289270
Alignment:
| Q |
143 |
tcttcagaatgtgtaccatcctcagcaacaacgacattacacggcaccttctcttgttgcatctacctcttcttgggataataatgcttccaatgcccct |
242 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| ||| | |||| | ||||||||||| ||||||||||||| | || ||||||||||||| |
|
|
| T |
20289145 |
tcttcggaatgtgtaccatcctcggcaacaacgaccgtacctgatgccttatattgttgcatctgcctcttcttgggacgttcattcttccaatgccccc |
20289244 |
T |
|
| Q |
243 |
tctccttacaataattgaaaatatca |
268 |
Q |
| |
|
|||||||| | |||||| |||||||| |
|
|
| T |
20289245 |
tctccttatagtaattgcaaatatca |
20289270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University